Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25893 Avicennia marina HOM05D008234 ORTHO05D010422 3.7e-241 837.8 428 100.0
Migut.A00244 Erythranthe guttata HOM05D008234 ORTHO05D010422 3.6e-151 538.9 430 65.1
SGA_v2.0_scaffold185G40113 Striga asiatica HOM05D008234 ORTHO05D010422 1.8e-147 526.6 428 63.8
SalBow4G0332 Salvia bowleyana HOM05D008234 ORTHO05D010422 1.2e-135 487.3 438 59.4
Dinv14224 Davidia involucrata HOM05D008234 ORTHO05D010422 5.8e-117 425.2 399 57.1
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 1.0e-113 414.5 399 53.9
Prupe.1G453000 Prunus persica HOM05D008234 ORTHO05D010422 4.7e-103 379.0 389 52.7
Lj7P707T11 Lonicera japonica HOM05D008234 ORTHO05D010422 4.4e-101 372.5 331 58.0
Lj1g0008618 Lotus japonicus HOM05D008234 ORTHO05D010422 1.0e-97 361.3 383 49.6
Cc08_g08970 Coffea canephora HOM05D008234 ORTHO05D010422 5.1e-97 359.0 432 47.9
Hma1.2p1_1255F.1_g270650 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 1.4e-94 350.9 334 53.9
Ca_12814_v3 Cicer arietinum L. HOM05D008234 ORTHO05D010422 4.0e-94 349.4 409 47.2
QL12p026340 Quercus lobata HOM05D008234 ORTHO05D010422 7.6e-93 345.1 382 50.3
TWI34G1157 Tripterygium wilfordii HOM05D008234 ORTHO05D010422 7.6e-93 345.1 356 49.7
HanXRQChr02g0048071 Helianthus annuus HOM05D008234 ORTHO05D010422 1.1e-91 341.3 382 47.1
TPR.G12012 Trifolium pratense HOM05D008234 ORTHO05D010422 1.4e-91 340.9 382 49.0
Lsat_1_v5_gn_6_11021 Lactuca sativa HOM05D008234 ORTHO05D010422 2.4e-91 340.1 375 46.4
TAR626G1903 Trochodendron aralioides HOM05D008234 ORTHO05D010422 5.4e-91 339.0 383 48.0
Ah.16g105160 Amaranthus hybridus HOM05D008234 ORTHO05D010422 4.6e-90 335.9 384 47.1
RcHm_v2.0_Chr6g0305711 Rosa chinensis HOM05D008234 ORTHO05D010422 2.3e-89 333.6 385 49.4
Aqoxy7G03839 Aquilegia oxysepala HOM05D008234 ORTHO05D010422 1.8e-86 323.9 403 44.9
CiPaw.08G023300 Carya illinoinensis HOM05D008234 ORTHO05D010422 6.9e-86 322.0 383 47.5
FAN20G2600 Fragaria x ananassa HOM05D008234 ORTHO05D010422 2.9e-84 316.6 361 48.5
CDE04G1659 Ceratophyllum demersum HOM05D008234 ORTHO05D010422 5.4e-83 312.4 379 44.6
Sabra06G0190100 Salix brachista HOM05D008234 ORTHO05D010422 1.3e-81 307.8 389 44.2
Medtr1g008360 Medicago truncatula HOM05D008234 ORTHO05D010422 3.7e-79 299.7 397 44.8
Hund19548 Selenicereus undatus HOM05D008234 ORTHO05D010422 4.8e-79 299.3 391 43.5
MD08G1118800 Malus domestica HOM05D008234 ORTHO05D010422 8.1e-79 298.5 380 46.6
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 2.0e-77 293.9 425 41.9
FAN15G0125 Fragaria x ananassa HOM05D008234 ORTHO05D010422 7.6e-77 292.0 363 46.8
Manes.03G062500 Manihot esculenta HOM05D008234 ORTHO05D010422 1.0e-76 291.6 387 42.9
FvH4_2g36160 Fragaria vesca HOM05D008234 ORTHO05D010422 2.9e-76 290.0 362 46.4
AUR62023021 Chenopodium quinoa HOM05D008234 ORTHO05D010422 8.4e-76 288.5 381 42.5
CSS0041765 Camellia sinensis var. sinensis HOM05D008234 ORTHO05D010422 1.6e-74 284.3 398 42.7
Glyma.14G141400 Glycine max HOM05D008234 ORTHO05D010422 1.6e-74 284.3 413 39.5
Oeu011264.1 Olea europaea HOM05D008234 ORTHO05D010422 1.0e-73 281.6 300 53.3
Phvul.001G078800 Phaseolus vulgaris HOM05D008234 ORTHO05D010422 1.9e-72 277.3 410 40.0
GSVIVG01035674001 Vitis vinifera HOM05D008234 ORTHO05D010422 1.9e-72 277.3 415 41.7
Ciclev10008407m.g Citrus clementina HOM05D008234 ORTHO05D010422 3.3e-72 276.6 397 42.6
Psat6g034200 Pisum sativum HOM05D008234 ORTHO05D010422 2.9e-68 263.5 418 39.7
Potri.006G243000 Populus trichocarpa HOM05D008234 ORTHO05D010422 9.3e-67 258.5 391 39.1
EL10Ac2g04079 Beta vulgaris HOM05D008234 ORTHO05D010422 2.1e-66 257.3 406 40.1
Os03g0159700 Oryza sativa ssp. japonica HOM05D008234 ORTHO05D010422 2.1e-66 257.3 384 38.3
Gohir.A03G071900 Gossypium hirsutum HOM05D008234 ORTHO05D010422 7.9e-66 255.4 319 44.8
ECA233G2242 Erigeron canadensis HOM05D008234 ORTHO05D010422 5.1e-65 252.7 291 46.0
Thecc.03G110200 Theobroma cacao HOM05D008234 ORTHO05D010422 1.6e-63 247.7 385 38.7
Zm00001eb004480 Zea mays HOM05D008234 ORTHO05D010422 8.2e-63 245.4 395 35.2
Duzib068G0878 Durio zibethinus HOM05D008234 ORTHO05D010422 1.4e-62 244.6 389 38.8
HPP92_009609 Vanilla planifolia HOM05D008234 ORTHO05D010422 4.1e-62 243.0 347 38.9
Psat6g034160 Pisum sativum HOM05D008234 ORTHO05D010422 2.6e-61 240.4 398 39.7
AUR62009335 Chenopodium quinoa HOM05D008234 ORTHO05D010422 3.4e-61 240.0 288 44.4
COL.COLO4_28841 Corchorus olitorius HOM05D008234 ORTHO05D010422 1.4e-57 228.0 371 36.9
Cfa013340 Carpinus fangiana HOM05D001758 ORTHO05D005969 2.3e-57 227.3 365 38.6
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 1.7e-52 211.1 380 35.5
Haze_21845 Corylus avellana HOM05D008234 ORTHO05D010422 2.9e-52 210.3 363 38.0
MELO3C003586.2 Cucumis melo HOM05D008234 ORTHO05D010422 9.4e-51 205.3 278 39.9
CsaV3_3G047390 Cucumis sativus L. HOM05D008234 ORTHO05D010422 1.6e-50 204.5 274 40.5
Gorai.003G103400 Gossypium raimondii HOM05D008234 ORTHO05D001322 6.7e-49 199.1 288 41.0
Nn2g11729 Nelumbo nucifera HOM05D008234 ORTHO05D010422 1.1e-46 191.8 389 35.0
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 5.3e-46 189.5 231 40.7
Gohir.D03G098650 Gossypium hirsutum HOM05D008234 ORTHO05D010422 8.8e-41 172.2 136 65.4
Gohir.D03G098600 Gossypium hirsutum HOM05D008234 ORTHO05D010422 1.2e-32 145.2 177 44.6
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 4.8e-31 139.8 269 32.7
Hma1.2p1_1434F.1_g283110 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 1.2e-13 82.0 83 44.6
Sed0021692 Sechium edule HOM05D008234 ORTHO05D010422 1.6e-10 71.6 93 39.8
AUR62030308 Chenopodium quinoa HOM05D002649 ORTHO05D002838 2.1e-10 71.2 250 28.0
Haze_20234 Corylus avellana HOM05D002649 ORTHO05D002838 2.3e-09 67.8 270 25.6
Cfa019999 Carpinus fangiana HOM05D002649 ORTHO05D002838 3.1e-09 67.4 271 25.1
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 3.4e-08 63.9 198 27.8
QL07p011040 Quercus lobata HOM05D002649 ORTHO05D002838 3.4e-08 63.9 270 24.4
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 5.8e-08 63.2 257 22.2
COL.COLO4_31427 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.5e-08 62.8 192 24.0
Manes.09G004200 Manihot esculenta HOM05D002649 ORTHO05D002838 9.8e-08 62.4 271 24.0
EL10Ac3g07246 Beta vulgaris HOM05D002649 ORTHO05D002838 1.7e-07 61.6 247 26.7
Hma1.2p1_0866F.1_g230110 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 1.7e-07 61.6 310 24.8
Hma1.2p1_0866F.1_g230120 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 1.7e-07 61.6 310 24.8
Hma1.2p1_2429F.1_g322005 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 1.7e-07 61.6 310 24.8
PGSC0003DMG400008773 Solanum tuberosum HOM05D002649 ORTHO05D002838 2.9e-07 60.8 324 24.7
FvH4_6g25350 Fragaria vesca HOM05D002649 ORTHO05D002838 3.7e-07 60.5 272 22.8
Glyma.19G129900 Glycine max HOM05D002649 ORTHO05D002838 3.7e-07 60.5 256 26.2
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 3.7e-07 60.5 392 22.4
Sc19g0008130 Simmondsia chinensis HOM05D002649 ORTHO05D002838 3.7e-07 60.5 299 23.4
TWI38G0505 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.9e-07 60.1 193 25.9
Actinidia17956 Actinidia chinensis HOM05D002649 ORTHO05D002838 6.4e-07 59.7 226 24.3
Sc13g0001100 Simmondsia chinensis HOM05D002649 ORTHO05D002838 6.4e-07 59.7 294 22.4
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 8.3e-07 59.3 146 29.5
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 8.3e-07 59.3 215 23.3
Haze_14591 Corylus avellana HOM05D000001 ORTHO05D010262 1.1e-06 58.9 226 25.7
Lj2C400G16 Lonicera japonica HOM05D002649 ORTHO05D002838 1.1e-06 58.9 227 24.2
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 1.1e-06 58.9 146 26.0
Atru.BG.305.p Acer truncatum HOM05D000001 ORTHO05D000003 1.9e-06 58.2 179 25.1
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 1.9e-06 58.2 371 20.2
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 1.9e-06 58.2 142 27.5
Cpa.g.sc2869.3 Carica papaya HOM05D002649 ORTHO05D002838 1.9e-06 58.2 292 22.6
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 1.9e-06 58.2 266 23.3
FAN02G2210 Fragaria x ananassa HOM05D002649 ORTHO05D002838 1.9e-06 58.2 272 22.1
Gohir.D02G007700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.9e-06 58.2 177 23.2
Gorai.005G009200 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.9e-06 58.2 177 23.2
Ciclev10018358m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.4e-06 57.8 183 25.1
Potri.004G047800 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.4e-06 57.8 183 23.5
Cfa005509 Carpinus fangiana HOM05D002649 ORTHO05D002838 3.2e-06 57.4 262 23.7
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 3.2e-06 57.4 146 29.5
Migut.J01390 Erythranthe guttata HOM05D006258 ORTHO05D007961 3.2e-06 57.4 158 24.1
Cpa.g.sc27.13 Carica papaya HOM05D000001 ORTHO05D000003 4.1e-06 57.0 196 21.4
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 4.1e-06 57.0 143 25.9
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.1e-06 57.0 143 25.9
Glyma.03G127100 Glycine max HOM05D002649 ORTHO05D002838 4.1e-06 57.0 256 25.8
Sabra06G0026700 Salix brachista HOM05D002649 ORTHO05D002838 4.1e-06 57.0 303 23.1
Atru.chr7.3 Acer truncatum HOM05D006258 ORTHO05D007961 5.4e-06 56.6 186 22.0
Eucgr.L02158 Eucalyptus grandis HOM05D000001 ORTHO05D000003 5.4e-06 56.6 175 24.0
Lsat_1_v5_gn_2_76721 Lactuca sativa HOM05D000891 ORTHO05D000761 5.4e-06 56.6 187 23.5
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 5.4e-06 56.6 146 28.1
CSS0023965 Camellia sinensis var. sinensis HOM05D002649 ORTHO05D002838 7.0e-06 56.2 274 22.6
DCAR_020087 Daucus carota HOM05D006258 ORTHO05D007961 7.0e-06 56.2 227 22.0
Duzib128G1639 Durio zibethinus HOM05D002649 ORTHO05D002838 7.0e-06 56.2 225 23.1
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 7.0e-06 56.2 143 25.9
Gohir.A02G007900 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.0e-06 56.2 192 22.4
Manes.10G074400 Manihot esculenta HOM05D003056 ORTHO05D003422 7.0e-06 56.2 149 26.2
PSO215G0001 Papaver somniferum HOM05D006414 ORTHO05D007780 7.0e-06 56.2 135 28.9
TPR.G14537 Trifolium pratense HOM05D000001 ORTHO05D009488 7.0e-06 56.2 141 26.2
CANSAT01G3161 Cannabis sativa HOM05D000424 ORTHO05D000355 9.2e-06 55.8 141 27.7
Cfa010953 Carpinus fangiana HOM05D002649 ORTHO05D002838 9.2e-06 55.8 248 24.2
ECA247G0229 Erigeron canadensis HOM05D002649 ORTHO05D002838 9.2e-06 55.8 271 24.7
SabraUnG0002300 Salix brachista HOM05D002649 ORTHO05D002838 9.2e-06 55.8 303 23.1
SMO114G0119 Selaginella moellendorffii HOM05D000001 ORTHO05D375854 9.2e-06 55.8 305 24.3


User provided reference genes

Program Settings