Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 8.0e-208 726.9 371 100.0
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 2.0e-150 536.2 368 75.5
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 9.1e-135 484.2 375 73.1
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.4e-97 359.0 380 56.3
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.3e-96 357.5 383 55.1
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 6.4e-96 355.1 399 57.1
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 2.4e-95 353.2 357 57.1
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.2e-94 350.9 376 56.1
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 3.5e-94 349.4 381 55.6
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.7e-93 347.1 376 55.9
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.3e-93 346.7 393 50.9
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 3.3e-92 342.8 376 55.1
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.5e-89 334.0 406 51.5
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.2e-86 324.3 308 58.8
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.0e-85 321.2 344 55.2
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.3e-85 320.9 302 61.3
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.6e-83 313.9 364 54.7
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.8e-82 310.5 390 50.5
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 6.8e-82 308.5 375 52.0
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 2.9e-80 303.1 390 50.3
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 6.4e-80 302.0 361 52.6
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.1e-79 299.3 385 50.1
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 3.5e-78 296.2 364 51.1
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 4.6e-78 295.8 356 52.0
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 6.0e-78 295.4 358 51.1
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.3e-77 293.5 362 51.4
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.3e-77 293.5 385 49.9
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 3.0e-77 293.1 338 54.1
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.6e-77 292.0 339 52.2
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.3e-76 289.7 362 50.8
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 3.3e-76 289.7 334 53.3
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.3e-76 288.5 370 49.7
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 7.3e-76 288.5 315 54.3
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.6e-75 287.3 374 51.6
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 1.6e-75 287.3 349 52.1
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.1e-75 287.0 395 48.9
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 3.6e-75 286.2 369 52.3
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 3.6e-75 286.2 369 49.3
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 4.0e-74 282.7 309 55.3
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 4.0e-74 282.7 382 48.4
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 8.9e-74 281.6 347 50.7
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 7.6e-73 278.5 308 53.2
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.7e-72 277.3 388 45.6
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.2e-72 276.9 353 49.9
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.9e-71 273.9 340 50.6
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 1.9e-71 273.9 330 50.6
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 4.1e-71 272.7 366 46.7
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 9.2e-71 271.6 350 48.9
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.2e-70 271.2 345 49.0
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.6e-70 270.8 357 49.6
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 3.5e-70 269.6 364 47.5
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.5e-70 269.6 313 51.1
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 4.6e-70 269.2 372 49.7
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 4.6e-70 269.2 378 46.0
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 2.3e-69 266.9 344 46.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 3.3e-68 263.1 355 48.2
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 4.3e-68 262.7 357 47.9
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 2.8e-67 260.0 422 42.9
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 8.1e-67 258.5 295 53.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 8.9e-66 255.0 353 47.3
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 8.9e-66 255.0 351 46.7
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 1.5e-65 254.2 358 45.8
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 2.6e-65 253.4 351 45.0
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.4e-65 252.7 368 45.4
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 7.6e-65 251.9 354 46.6
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 2.9e-64 250.0 382 42.4
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.9e-64 250.0 392 44.1
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 6.4e-64 248.8 375 47.2
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 6.4e-64 248.8 351 46.2
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.4e-63 247.7 371 45.8
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 2.7e-62 243.4 299 51.5
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 6.0e-62 242.3 371 44.2
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 2.3e-61 240.4 236 54.7
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 5.1e-61 239.2 332 47.9
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 6.6e-61 238.8 363 44.1
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.3e-60 236.1 209 62.2
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.4e-58 231.1 218 58.7
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.4e-58 231.1 357 44.5
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 5.3e-58 229.2 336 45.2
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 5.3e-58 229.2 373 45.3
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.6e-57 226.9 376 46.5
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 4.5e-57 226.1 319 44.8
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 7.6e-57 225.3 358 45.8
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.2e-55 219.5 372 41.9
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 9.3e-55 218.4 312 46.5
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.7e-54 216.9 392 42.3
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.1e-52 211.5 332 43.1
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.8e-51 206.8 403 41.2
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.5e-49 201.1 314 44.6
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 9.9e-49 198.4 295 44.7
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.2e-46 191.4 335 42.7
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 2.7e-46 190.3 292 45.9
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 4.6e-46 189.5 332 44.9
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 6.0e-46 189.1 316 43.7
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 4.8e-43 179.5 333 40.8
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 8.1e-43 178.7 333 41.1
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 4.9e-40 169.5 389 36.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.9e-39 167.5 299 40.8
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 9.3e-39 165.2 324 39.8
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.1e-38 164.1 229 46.3
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 6.7e-37 159.1 253 47.8
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 6.9e-34 149.1 325 38.8
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 6.5e-32 142.5 357 36.1
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.2e-31 139.8 220 44.1
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 7.2e-31 139.0 319 36.4
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 9.3e-31 138.7 339 36.9
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 1.2e-30 138.3 338 34.9
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 2.7e-30 137.1 319 35.4
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 3.0e-29 133.7 333 35.7
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.5e-28 130.6 331 35.0
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 2.5e-28 130.6 331 35.0
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 3.3e-28 130.2 335 34.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 5.7e-28 129.4 338 35.2
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 2.2e-27 127.5 337 36.5
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 8.2e-27 125.6 275 37.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.1e-26 125.2 339 33.9
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 2.4e-26 124.0 190 40.0
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.6e-25 120.6 335 32.5
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 2.6e-25 120.6 308 37.0
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 5.9e-25 119.4 308 36.0
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 8.5e-24 115.5 331 34.4
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 9.4e-23 112.1 331 34.1
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.2e-22 111.7 317 35.0
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 3.4e-17 93.6 283 32.9
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.9e-16 90.5 138 42.8
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.1e-15 88.6 317 32.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.5e-15 87.4 138 44.9
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.1e-14 84.3 50 80.0
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 2.3e-13 80.9 63 65.1
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.3e-13 80.9 115 45.2
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 5.2e-13 79.7 161 38.5
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.3e-11 75.1 194 37.6
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 3.1e-10 70.5 173 34.1
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 4.1e-10 70.1 173 34.1
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 7.7e-09 65.9 192 31.8
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 1.0e-08 65.5 76 46.1
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 3.2e-07 60.5 55 58.2
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 3.2e-07 60.5 55 58.2
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 3.2e-07 60.5 55 58.2


User provided reference genes

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