Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 7.1e-68 260.4 124 100.0
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.5e-52 207.6 123 78.0
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 7.2e-52 207.2 124 76.6
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 7.2e-52 207.2 124 76.6
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 4.3e-49 198.0 124 75.8
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.7e-49 197.6 124 76.6
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.8e-48 194.5 124 76.6
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.8e-48 194.5 124 76.6
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 8.2e-48 193.7 124 75.0
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 4.1e-47 191.4 123 74.0
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 9.0e-47 190.3 123 74.8
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 9.0e-47 190.3 123 74.8
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.0e-46 189.1 123 73.2
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 2.6e-46 188.7 123 73.2
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 3.4e-46 188.3 123 74.8
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 5.9e-46 187.6 123 73.2
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 7.7e-46 187.2 122 73.0
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 1.0e-45 186.8 123 74.0
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 1.0e-45 186.8 123 69.9
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 1.0e-45 186.8 123 70.7
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 1.3e-45 186.4 124 68.5
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 1.3e-45 186.4 124 69.4
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 1.7e-45 186.0 120 72.5
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 2.2e-45 185.7 123 68.3
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 2.2e-45 185.7 123 71.5
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 3.8e-45 184.9 124 71.0
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 5.0e-45 184.5 123 72.4
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 5.0e-45 184.5 123 69.1
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.5e-45 184.1 126 70.6
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 6.5e-45 184.1 123 74.0
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 8.5e-45 183.7 123 70.7
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 8.5e-45 183.7 123 68.3
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 1.1e-44 183.3 123 68.3
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 1.1e-44 183.3 123 70.7
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 1.1e-44 183.3 123 70.7
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.1e-44 183.3 123 71.5
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 1.9e-44 182.6 123 67.5
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 1.9e-44 182.6 123 68.3
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 3.2e-44 181.8 123 67.5
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 3.2e-44 181.8 123 69.9
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 4.2e-44 181.4 123 67.5
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 4.2e-44 181.4 123 68.3
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 5.5e-44 181.0 120 70.0
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 9.4e-44 180.3 123 69.9
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 9.4e-44 180.3 123 66.7
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 9.4e-44 180.3 123 67.5
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 1.2e-43 179.9 119 71.4
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.6e-43 179.5 123 69.1
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 1.6e-43 179.5 124 66.1
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 1.6e-43 179.5 123 68.3
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.6e-43 179.5 123 69.9
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 1.6e-43 179.5 123 68.3
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 2.1e-43 179.1 123 69.1
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 2.7e-43 178.7 120 68.3
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 2.7e-43 178.7 123 68.3
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 2.7e-43 178.7 120 70.0
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 4.6e-43 177.9 123 68.3
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 4.6e-43 177.9 124 66.1
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 6.1e-43 177.6 123 66.7
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 6.1e-43 177.6 123 67.5
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 7.9e-43 177.2 123 69.1
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 7.9e-43 177.2 123 69.1
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 7.9e-43 177.2 124 66.9
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 1.0e-42 176.8 123 67.5
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 1.4e-42 176.4 123 65.9
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.8e-42 176.0 123 68.3
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 1.8e-42 176.0 120 68.3
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 2.3e-42 175.6 123 69.1
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.0e-42 175.3 123 68.3
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 3.0e-42 175.3 120 69.2
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 3.0e-42 175.3 120 68.3
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 3.0e-42 175.3 123 66.7
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 5.1e-42 174.5 123 67.5
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.7e-42 174.1 123 68.3
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 1.1e-41 173.3 123 66.7
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.1e-41 173.3 123 67.5
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.1e-41 173.3 121 66.1
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 1.5e-41 172.9 123 65.9
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.5e-41 172.9 123 67.5
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 3.3e-41 171.8 123 64.2
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 4.3e-41 171.4 122 63.9
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 5.7e-41 171.0 123 66.7
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 7.4e-41 170.6 123 64.2
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 9.7e-41 170.2 123 65.9
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.2e-40 169.1 123 66.7
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.7e-40 168.3 123 67.5
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.8e-40 167.9 123 64.2
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 4.8e-40 167.9 120 65.8
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.1e-39 166.8 122 64.8
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 3.1e-39 165.2 124 66.9
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 4.1e-39 164.9 101 72.3
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.1e-39 164.9 123 65.9
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 9.1e-39 163.7 124 61.3
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.0e-38 162.5 124 62.9
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.4e-38 161.8 124 62.9
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.4e-38 161.8 124 62.9
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 5.9e-38 161.0 110 70.0
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.7e-38 160.6 124 62.1
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.7e-38 160.6 124 62.1
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 1.3e-37 159.8 116 65.5
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 1.3e-37 159.8 120 59.2
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 2.9e-37 158.7 114 66.7
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 3.8e-37 158.3 123 61.0
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 5.0e-37 157.9 110 66.4
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 6.5e-37 157.5 110 66.4
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 6.5e-37 157.5 110 68.2
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.1e-36 156.8 116 67.2
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 1.4e-36 156.4 116 64.7
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.4e-36 156.4 117 63.2
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 4.2e-36 154.8 110 65.5
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 4.2e-36 154.8 117 64.1
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 7.2e-36 154.1 110 65.5
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 9.4e-36 153.7 114 64.9
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 1.6e-35 152.9 117 62.4
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 2.1e-35 152.5 108 65.7
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 2.7e-35 152.1 110 64.5
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 3.6e-35 151.8 117 62.4
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 4.7e-35 151.4 117 61.5
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.1e-35 151.0 115 67.0
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 3.0e-34 148.7 120 58.3
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 5.1e-34 147.9 100 66.0
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 6.7e-34 147.5 115 60.0
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.5e-33 146.4 120 55.8
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 7.4e-33 144.1 120 55.8
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.7e-32 142.9 119 61.3
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 4.8e-32 141.4 120 55.0
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 7.0e-31 137.5 124 50.8
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 9.1e-31 137.1 111 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 1.6e-30 136.3 118 54.2
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 5.9e-30 134.4 96 62.5
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 5.9e-30 134.4 124 57.3
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 5.9e-30 134.4 124 57.3
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 1.1e-28 130.2 112 53.6
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 9.4e-28 127.1 113 53.1
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 5.2e-26 121.3 135 48.9
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 7.0e-23 110.9 68 69.1
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 2.0e-22 109.4 79 69.6
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 2.2e-16 89.4 49 75.5
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 1.3e-13 80.1 66 60.6
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 6.5e-13 77.8 64 64.1
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 3.2e-12 75.5 66 57.6
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 2.1e-11 72.8 44 70.5
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 1.4e-10 70.1 56 60.7


User provided reference genes

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