Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 5.6e-136 487.6 252 100.0
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 7.4e-88 327.8 217 79.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.0e-84 317.4 215 75.8
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.3e-84 317.0 210 75.7
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.4e-83 313.5 210 75.2
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.4e-83 313.5 218 76.6
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 3.8e-76 288.9 212 70.3
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 9.4e-75 284.3 209 70.3
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.0e-73 279.3 210 67.6
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.0e-73 279.3 210 67.6
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 5.7e-72 275.0 209 67.9
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 8.2e-71 271.2 206 66.0
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.6e-69 266.2 196 67.9
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.4e-69 265.8 202 64.9
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.1e-67 260.8 194 66.0
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.9e-67 260.0 202 64.9
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 4.2e-67 258.8 210 64.8
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.6e-66 256.9 207 63.8
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.1e-66 256.5 210 64.3
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 2.7e-66 256.1 209 63.6
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 3.6e-66 255.8 212 62.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 7.9e-66 254.6 200 64.5
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.0e-65 254.2 212 62.3
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.4e-65 253.8 206 64.1
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.3e-65 253.1 187 69.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.9e-65 252.3 205 64.9
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 5.1e-65 251.9 200 62.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.8e-65 251.1 203 62.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.5e-64 250.4 205 61.0
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.6e-64 249.6 215 62.8
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.6e-64 249.6 204 63.7
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.6e-64 249.6 204 60.3
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.3e-64 249.2 188 66.5
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 9.7e-64 247.7 206 58.7
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.3e-63 247.3 205 62.9
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.3e-63 247.3 205 60.5
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.7e-63 246.9 212 61.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 4.8e-63 245.4 221 58.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 4.1e-62 242.3 205 62.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 4.1e-62 242.3 214 59.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.2e-61 240.7 213 60.1
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.5e-61 238.8 202 60.9
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 7.7e-61 238.0 205 60.5
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.0e-60 237.7 213 58.2
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.2e-60 236.5 216 59.3
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.9e-60 236.1 204 60.8
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.0e-60 235.3 211 58.3
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 6.5e-60 235.0 203 58.6
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-59 234.2 204 57.8
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.5e-59 233.0 211 57.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.2e-58 230.7 204 57.8
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.1e-58 229.9 207 58.9
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.1e-58 229.9 200 59.0
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.7e-58 229.6 211 55.9
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.0e-58 228.0 202 57.4
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.0e-57 227.6 201 57.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.8e-57 226.9 209 56.0
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 5.2e-57 225.3 211 54.5
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 6.7e-57 224.9 197 57.9
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.7e-57 224.9 211 54.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 8.8e-57 224.6 212 55.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 8.8e-57 224.6 212 55.2
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.6e-56 223.0 212 54.7
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 3.3e-56 222.6 178 63.5
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 4.4e-56 222.2 215 54.0
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 4.4e-56 222.2 199 55.8
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.7e-56 221.9 234 51.3
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 5.7e-56 221.9 205 54.6
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 5.7e-56 221.9 194 56.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 7.4e-56 221.5 196 58.2
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 7.4e-56 221.5 206 54.4
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.7e-55 220.3 201 55.2
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.8e-55 219.5 198 56.6
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.7e-55 219.2 198 56.1
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.1e-54 217.6 201 54.2
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.8e-54 216.9 201 54.2
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.1e-54 216.1 202 54.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 3.1e-54 216.1 201 53.2
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.3e-54 215.3 201 53.7
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 9.1e-54 214.5 203 54.7
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.2e-53 214.2 203 54.2
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 4.5e-53 212.2 205 55.6
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 5.9e-53 211.8 212 53.3
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 7.7e-53 211.5 238 49.2
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.0e-52 211.1 207 56.5
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.0e-52 211.1 204 50.5
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.7e-52 210.3 198 54.5
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.8e-52 209.1 238 48.7
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.0e-52 208.8 201 52.7
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.9e-51 206.8 218 51.4
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 7.2e-51 204.9 203 54.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 7.2e-51 204.9 203 54.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.1e-50 203.4 199 52.8
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.1e-50 203.4 213 51.6
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 6.1e-50 201.8 212 53.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-49 201.1 183 55.7
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.8e-49 200.3 212 52.8
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.4e-48 196.1 208 49.0
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 4.4e-48 195.7 216 50.9
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.7e-47 193.7 202 52.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.2e-47 193.4 206 49.5
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 2.8e-47 193.0 199 49.2
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.1e-46 191.0 164 59.1
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.8e-46 190.3 202 53.0
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.2e-45 187.6 203 52.2
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.2e-45 187.6 137 66.4
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.3e-44 184.1 223 50.2
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 3.8e-44 182.6 212 45.3
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 4.2e-43 179.1 208 46.6
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.2e-42 177.6 222 46.4
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.0e-41 172.6 120 74.2
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 4.1e-38 162.5 147 56.5
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 5.4e-38 162.2 199 47.7
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 9.1e-38 161.4 208 42.8
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 9.1e-38 161.4 203 46.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.0e-37 160.2 208 45.7
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.5e-35 153.3 118 68.6
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 7.2e-35 151.8 206 45.1
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 5.9e-29 132.1 85 72.9
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 7.8e-29 131.7 214 34.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 5.0e-28 129.0 196 37.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-27 126.7 204 35.3
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-27 126.7 204 35.3
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.3e-27 126.3 204 36.8
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-26 123.2 204 34.3
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 3.4e-24 116.3 206 35.4
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 9.8e-24 114.8 177 37.3
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 8.3e-23 111.7 207 32.9
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.2e-22 109.8 184 31.5
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 5.4e-22 109.0 181 32.6
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 3.3e-19 99.8 187 34.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 4.3e-19 99.4 204 33.3
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 8.9e-17 91.7 183 32.8
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 9.8e-16 88.2 175 33.1
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 5.4e-14 82.4 74 59.5
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.6e-13 80.9 70 60.0
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.6e-13 80.9 70 60.0
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.7e-13 80.1 66 65.2
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 3.9e-12 76.3 60 63.3
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 8.6e-12 75.1 95 35.8
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.5e-11 73.6 108 33.3
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 2.8e-10 70.1 127 40.9
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 3.6e-10 69.7 237 24.9
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 5.2e-09 65.9 114 30.7
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-08 64.7 70 41.4
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 2.0e-08 63.9 94 47.9
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.1e-06 58.2 46 52.2


User provided reference genes

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