Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1371.3 711 100.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1256.1 715 89.2
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1238.0 720 89.3
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1223.8 713 87.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1222.2 703 88.1
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1221.1 713 86.8
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1213.0 701 86.9
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1209.9 712 86.9
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1209.9 699 86.6
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1206.8 704 86.5
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1205.7 709 86.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1204.9 697 86.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1203.0 707 85.9
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1202.2 705 85.7
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 704 85.5
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1199.9 703 85.3
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1199.9 704 85.2
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1199.9 704 84.9
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1196.4 711 84.5
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1194.5 705 85.2
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1193.7 705 86.0
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1193.7 706 85.0
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1192.9 699 85.4
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1192.6 709 85.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 703 84.2
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 705 85.7
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1191.0 699 85.1
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1190.3 704 86.1
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1190.3 709 84.3
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1190.3 704 85.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 709 84.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1187.6 715 84.5
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1187.6 706 85.4
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1186.4 704 85.5
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1186.0 707 85.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1184.1 708 84.5
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1182.9 704 84.4
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1181.8 703 84.8
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1179.9 705 85.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 732 82.7
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1176.8 706 83.3
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1170.2 696 84.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1167.9 711 82.7
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 694 84.3
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 707 82.6
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1160.2 703 84.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1160.2 703 84.1
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1159.8 705 83.7
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1158.7 712 84.1
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1154.8 705 83.0
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1153.3 693 83.7
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1151.0 688 83.7
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1140.9 707 83.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1138.6 706 82.3
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1134.0 706 80.0
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1133.6 693 82.4
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1133.2 706 80.0
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 702 82.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 710 82.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1123.6 733 79.8
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 699 82.1
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 701 81.3
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 702 79.5
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 705 78.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1102.0 706 77.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1099.7 712 80.2
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1098.6 702 80.6
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1092.4 702 78.9
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1090.9 699 78.5
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1090.9 700 78.7
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 699 78.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 656 83.8
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 699 78.4
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 699 78.4
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 699 78.3
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 701 77.6
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 699 78.3
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 701 77.5
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 717 81.2
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1083.9 700 78.0
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1082.4 693 78.8
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1082.4 725 78.3
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 701 77.5
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 701 77.5
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 701 77.5
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 697 76.9
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1076.6 699 77.3
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 4.9e-312 1073.5 700 77.0
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 7.3e-311 1070.1 659 83.6
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 9.7e-311 1069.7 706 76.6
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.8e-310 1068.1 618 86.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 3.4e-308 1061.2 619 85.3
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.0e-303 1045.4 710 74.6
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.7e-302 1042.3 710 74.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.2e-302 1042.0 686 76.7
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.2e-302 1042.0 704 77.7
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.1e-301 1037.7 695 77.8
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.4e-298 1029.2 713 75.9
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.9e-298 1028.9 655 78.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.2e-298 1026.9 706 74.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 8.0e-297 1023.5 699 73.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 3.0e-296 1021.5 700 73.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.7e-286 989.2 583 85.6
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-285 984.2 731 72.4
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.7e-284 981.9 658 74.9
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.2e-282 974.9 702 72.2
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.0e-279 965.7 541 90.4
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.1e-277 956.8 569 85.6
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 7.0e-261 904.0 696 70.7
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.7e-260 902.1 728 68.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.1e-253 878.2 696 67.2
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.2e-240 834.7 570 74.9
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.7e-238 829.7 535 79.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.9e-238 828.2 528 79.4
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.6e-231 805.8 448 92.6
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.3e-211 740.3 678 56.3
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 3.5e-204 715.7 620 62.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.6e-199 699.5 558 69.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.6e-196 688.7 627 55.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.1e-192 677.6 402 85.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-192 677.2 392 87.2
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 6.7e-179 631.7 517 66.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.6e-175 620.5 631 50.7
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.2e-166 590.1 647 48.1
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.9e-165 587.0 639 49.0
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.4e-160 568.9 399 77.7
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 4.6e-143 512.7 724 46.0
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.0e-142 509.2 638 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.8e-139 498.8 630 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.4e-136 489.2 640 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.3e-133 479.9 624 43.3
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.3e-129 468.0 306 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.6e-108 396.7 399 53.6
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.6e-108 396.7 246 82.9
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.8e-105 386.7 399 57.9
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.9e-88 331.3 224 70.5
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.6e-74 284.3 224 68.3
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.0e-58 231.5 130 86.9
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.2e-56 223.0 171 72.5
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.3e-40 169.9 144 57.6
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.5e-32 142.9 78 87.2
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 1.2e-26 125.9 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.0e-25 120.6 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.6e-23 114.4 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 2.0e-21 108.6 92 59.8
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 4.3e-16 90.9 61 75.4
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 9.5e-16 89.7 56 75.0
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 5.2e-14 84.0 67 67.2
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 8.9e-14 83.2 58 72.4
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 5.8e-13 80.5 55 78.2
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 3.8e-12 77.8 55 76.4
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 3.1e-06 58.2 30 73.3


User provided reference genes

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