Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.9e-93 345.9 179 100.0
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 4.3e-74 281.6 179 81.6
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 5.8e-71 271.2 179 79.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.4e-69 265.8 180 78.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.1e-68 262.7 177 79.7
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 6.9e-64 247.7 175 77.1
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 9.0e-64 247.3 186 73.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 9.0e-64 247.3 186 73.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.8e-62 241.9 180 76.7
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-61 240.0 180 76.1
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 4.2e-61 238.4 173 74.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-60 236.1 180 75.0
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.6e-60 235.0 190 70.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.0e-59 233.8 190 70.5
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 5.1e-59 231.5 186 72.0
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.9e-58 229.6 175 70.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 9.6e-58 227.3 175 70.3
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.3e-57 226.9 186 70.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.7e-57 225.3 173 72.8
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 8.2e-57 224.2 184 67.9
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.4e-56 223.4 175 69.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.4e-56 222.6 188 65.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 3.1e-56 222.2 184 65.8
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 5.3e-56 221.5 175 67.4
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 6.9e-56 221.1 178 69.1
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 9.0e-56 220.7 178 68.5
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 9.0e-56 220.7 178 68.5
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 9.0e-56 220.7 175 70.3
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.0e-56 220.7 173 71.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.2e-55 220.3 186 68.3
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.2e-55 220.3 173 70.5
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 192 67.2
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 175 70.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.6e-55 219.2 175 67.4
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.6e-55 219.2 174 69.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.6e-55 217.6 179 68.2
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 7.6e-55 217.6 203 63.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.6e-55 217.6 173 69.9
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.3e-54 216.9 179 67.6
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.8e-54 215.3 181 68.5
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 5.0e-54 214.9 182 68.1
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 5.0e-54 214.9 176 69.3
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.0e-54 214.9 178 65.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 6.5e-54 214.5 183 64.5
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.1e-53 213.8 178 69.1
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.1e-53 213.8 188 65.4
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.1e-53 213.8 181 65.2
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.4e-53 213.4 178 64.6
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.9e-53 213.0 205 60.5
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.5e-53 212.6 175 67.4
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 4.2e-53 211.8 175 66.9
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 4.2e-53 211.8 177 63.8
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.2e-53 211.8 182 63.7
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.3e-53 210.7 175 66.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.2e-52 210.3 189 63.0
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.2e-52 210.3 175 68.6
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.6e-52 209.9 174 64.4
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.6e-52 209.9 188 62.2
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.1e-52 209.5 177 67.8
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.6e-52 208.4 175 65.7
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.6e-52 208.4 175 65.7
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.1e-52 208.0 168 68.5
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 7.9e-52 207.6 133 78.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.9e-52 207.6 175 65.7
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 7.9e-52 207.6 184 62.5
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 3.0e-51 205.7 173 64.2
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 3.0e-51 205.7 175 62.9
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.9e-51 205.3 182 65.4
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 5.1e-51 204.9 189 63.0
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 189 62.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-50 203.8 176 65.3
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-50 203.0 191 62.3
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.9e-50 203.0 188 64.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 3.3e-50 202.2 192 58.3
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 3.3e-50 202.2 174 62.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.3e-50 202.2 184 59.2
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 5.7e-50 201.4 191 62.3
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 5.7e-50 201.4 192 62.5
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.7e-50 201.4 195 60.5
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.7e-50 201.4 176 64.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 7.4e-50 201.1 188 60.6
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 7.4e-50 201.1 193 62.2
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 7.4e-50 201.1 193 62.2
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 7.4e-50 201.1 192 62.5
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 9.7e-50 200.7 192 62.0
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 9.7e-50 200.7 157 70.1
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.3e-49 200.3 191 61.8
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.6e-49 199.9 193 62.2
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.6e-49 199.9 176 64.2
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.8e-49 199.1 201 59.2
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 2.8e-49 199.1 171 61.4
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.8e-49 198.4 174 61.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 6.3e-49 198.0 176 63.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.8e-48 196.4 175 64.0
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 9.0e-48 194.1 183 61.7
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 9.0e-48 194.1 185 59.5
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.0e-48 194.1 177 65.0
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 9.0e-48 194.1 177 63.3
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-47 193.7 194 59.3
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.6e-47 192.6 148 66.9
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.2e-46 189.5 158 69.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 5.0e-46 188.3 191 58.6
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 5.0e-46 188.3 191 58.6
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 5.5e-45 184.9 192 55.7
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 9.4e-45 184.1 186 57.5
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 9.4e-45 184.1 176 55.1
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.1e-44 183.0 196 56.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.9e-43 178.7 176 59.7
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.5e-42 176.8 189 56.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 4.3e-42 175.3 192 55.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.3e-42 175.3 120 72.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.2e-41 172.9 101 85.1
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 8.2e-41 171.0 176 58.5
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-39 167.2 180 59.4
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.2e-39 167.2 156 62.8
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.6e-39 166.0 141 69.5
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.7e-38 163.3 134 59.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.4e-37 160.2 188 48.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.9e-37 159.8 124 66.9
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.2e-36 157.1 148 62.8
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.4e-35 153.7 186 48.4
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 2.6e-34 149.4 91 79.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 7.4e-34 147.9 132 58.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 7.0e-32 141.4 102 68.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 8.5e-30 134.4 108 63.0
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 6.1e-28 128.3 146 55.5
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.3e-27 126.3 112 58.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.5e-26 123.6 106 60.4
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.5e-26 123.6 101 61.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.0e-26 123.2 117 53.8
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.3e-26 122.5 126 52.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 3.3e-26 122.5 101 60.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 4.8e-25 118.6 90 71.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.4e-24 117.1 102 59.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-23 113.6 104 54.8
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.8e-22 109.0 110 51.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.5e-22 107.8 115 52.2
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-21 106.3 103 52.4
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.5e-21 106.3 98 55.1
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.2e-21 105.5 103 55.3
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.1e-20 103.2 101 53.5
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.7e-20 102.8 175 41.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-19 100.9 102 59.8
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 5.2e-19 98.6 73 63.0
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.2e-18 97.4 101 50.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.3e-17 94.0 64 75.0
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 2.8e-17 92.8 101 50.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.8e-17 92.0 67 70.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.4e-16 90.5 98 45.9
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 7.0e-16 88.2 145 42.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.0e-15 86.7 89 51.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.4e-11 73.9 130 34.6


User provided reference genes

Program Settings