Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 4.1e-69 264.6 134 100.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.9e-58 229.2 130 86.9
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.5e-58 228.8 130 86.9
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 2.5e-58 228.8 130 86.2
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 4.2e-58 228.0 130 85.4
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 4.2e-58 228.0 130 84.6
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 7.2e-58 227.3 130 85.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 4.7e-57 224.6 130 85.4
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 8.0e-57 223.8 130 82.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 8.0e-57 223.8 130 85.4
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.0e-56 223.4 130 82.3
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.0e-56 223.4 130 84.6
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.4e-56 223.0 130 82.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.4e-56 223.0 130 81.5
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.4e-56 223.0 130 83.8
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.4e-56 223.0 130 82.3
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.8e-56 222.6 130 81.5
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.8e-56 222.6 130 81.5
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.8e-56 222.6 130 83.8
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.3e-56 222.2 130 82.3
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 3.0e-56 221.9 130 83.1
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 3.0e-56 221.9 130 83.8
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 5.2e-56 221.1 130 83.1
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 6.8e-56 220.7 130 83.8
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 6.8e-56 220.7 130 83.8
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 8.8e-56 220.3 130 81.5
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 8.8e-56 220.3 130 83.8
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.5e-55 219.5 130 80.0
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.5e-55 219.5 130 81.5
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.5e-55 219.5 130 83.1
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.5e-55 219.5 129 82.2
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.0e-55 219.2 132 81.8
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 2.6e-55 218.8 130 83.8
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.4e-55 218.4 130 83.1
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 4.4e-55 218.0 130 80.0
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 4.4e-55 218.0 129 82.2
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 5.7e-55 217.6 130 81.5
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 7.5e-55 217.2 130 81.5
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 9.8e-55 216.9 130 81.5
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.3e-54 216.5 130 80.8
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.3e-54 216.5 130 82.3
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.7e-54 216.1 130 80.0
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.2e-54 215.7 130 80.0
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.2e-54 215.7 130 80.8
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.2e-54 215.7 129 80.6
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 2.2e-54 215.7 129 81.4
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 2.2e-54 215.7 130 80.0
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.8e-54 215.3 130 80.0
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.8e-54 215.3 130 80.8
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.8e-54 215.3 130 80.8
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.8e-54 215.3 130 83.8
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 3.7e-54 214.9 131 80.2
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.7e-54 214.9 129 82.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 3.7e-54 214.9 130 80.8
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 4.8e-54 214.5 130 80.8
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 4.8e-54 214.5 129 82.2
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 4.8e-54 214.5 128 81.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.8e-54 214.5 130 80.0
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 4.8e-54 214.5 130 80.0
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 6.3e-54 214.2 131 78.6
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.3e-54 213.8 130 80.0
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 8.3e-54 213.8 130 80.0
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.1e-53 213.4 130 78.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.1e-53 213.4 130 80.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.8e-53 212.6 131 78.6
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.8e-53 212.6 131 78.6
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.8e-53 212.6 131 78.6
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.8e-53 212.6 130 80.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.8e-53 212.6 130 80.8
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.4e-53 212.2 129 76.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.4e-53 212.2 130 77.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.4e-53 212.2 131 80.9
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 3.1e-53 211.8 130 79.2
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-53 211.8 130 79.2
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.1e-53 211.8 121 83.5
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 3.1e-53 211.8 130 78.5
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 4.1e-53 211.5 130 77.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 4.1e-53 211.5 129 79.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 4.1e-53 211.5 128 78.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 4.1e-53 211.5 130 77.7
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 5.4e-53 211.1 130 77.7
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.6e-52 209.5 129 79.1
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.7e-52 208.8 140 76.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 2.7e-52 208.8 128 79.7
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.5e-52 208.4 130 77.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.5e-52 208.4 128 78.9
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 5.9e-52 207.6 155 70.3
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 7.7e-52 207.2 128 78.9
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 7.7e-52 207.2 130 77.7
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-51 206.8 128 78.1
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-51 206.8 128 78.9
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.0e-51 206.8 130 76.9
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.7e-51 206.1 130 76.9
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 3.8e-51 204.9 122 80.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-50 203.4 132 75.0
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-50 203.4 132 75.0
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-50 202.2 130 75.4
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.5e-50 202.2 130 74.6
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.1e-49 199.1 121 76.9
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.1e-49 199.1 130 73.8
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 8.8e-48 193.7 130 73.1
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 8.8e-48 193.7 130 73.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 8.8e-48 193.7 130 73.1
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.2e-47 193.4 130 73.8
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 7.5e-47 190.7 129 69.0
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.3e-46 189.9 129 68.2
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.7e-44 182.2 106 83.0
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 3.5e-44 181.8 129 65.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 7.7e-44 180.6 130 64.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.0e-43 180.3 123 66.7
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.1e-42 176.8 130 66.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 8.0e-41 170.6 101 81.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-40 169.9 101 80.2
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-36 156.8 96 80.2
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.7e-35 152.9 95 77.9
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.5e-34 147.1 98 75.5
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 9.5e-34 147.1 96 75.0
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.1e-33 146.0 96 76.0
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-32 143.7 98 73.5
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-32 141.4 96 74.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-32 141.4 113 65.5
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-32 141.4 130 60.8
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.8e-32 141.0 96 72.9
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 8.9e-32 140.6 96 75.0
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-31 139.4 95 73.7
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-31 138.7 96 72.9
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-30 135.6 94 73.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-30 134.8 125 60.0
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-30 134.8 107 66.4
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-30 134.0 94 72.3
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-26 120.6 96 66.7
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-25 119.8 83 72.3
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-22 108.2 62 85.5
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-21 105.1 62 82.3
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-21 105.1 98 59.2
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-21 105.1 98 59.2
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 8.6e-19 97.4 66 74.2
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-18 97.1 65 75.4
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-18 97.1 97 58.8
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.3e-16 89.4 57 71.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 8.9e-16 87.4 67 73.1
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 5.8e-15 84.7 140 40.0
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-14 81.6 48 81.2
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-14 81.6 48 81.2
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-13 79.0 116 43.1
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.1e-13 78.6 49 73.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.1e-13 78.6 49 73.5
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-07 59.3 40 72.5
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 4.9e-06 55.1 32 75.0


User provided reference genes

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