Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.4e-125 451.1 236 100.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 3.0e-91 339.0 236 77.1
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.4e-90 334.3 246 75.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 2.8e-89 332.4 247 74.1
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.7e-86 323.2 305 62.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.4e-85 320.1 238 71.8
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 9.3e-85 317.4 211 78.7
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.1e-76 289.7 242 68.6
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.0e-75 285.8 239 66.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.0e-75 285.8 241 68.0
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.9e-75 285.4 241 68.5
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.5e-74 283.5 239 66.1
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.3e-74 282.3 250 64.0
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 5.7e-74 281.6 244 64.8
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 5.7e-74 281.6 244 64.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.8e-73 279.3 247 64.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.1e-72 275.8 247 64.4
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.9e-71 271.6 240 62.9
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 7.7e-71 271.2 237 65.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.9e-70 269.2 233 65.2
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.4e-69 266.9 275 57.8
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.2e-69 265.8 241 63.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 2.3e-67 259.6 238 63.4
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 8.8e-67 257.7 235 65.5
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.1e-66 257.3 247 60.3
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.6e-66 256.1 238 63.0
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 4.4e-66 255.4 236 61.9
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 5.7e-66 255.0 236 61.9
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 5.7e-66 255.0 219 65.3
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 5.7e-66 255.0 232 61.6
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.7e-65 253.4 233 62.7
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.8e-65 252.7 187 71.1
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.8e-64 250.0 191 68.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.8e-64 250.0 237 62.0
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 3.1e-64 249.2 237 61.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.1e-64 248.8 199 68.3
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 7.0e-64 248.1 191 69.6
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 9.1e-64 247.7 247 60.3
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.2e-63 247.3 212 65.1
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.5e-63 246.9 241 60.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.9e-63 245.0 188 68.6
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 7.7e-63 244.6 188 69.1
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.9e-62 242.7 237 59.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.8e-62 242.3 236 58.9
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.8e-62 242.3 243 60.1
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 8.5e-62 241.1 188 68.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.9e-61 240.0 232 59.9
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.5e-61 239.6 241 59.8
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.5e-61 239.6 243 58.0
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.5e-61 239.6 238 59.7
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.2e-61 239.2 238 58.4
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 4.2e-61 238.8 238 59.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.2e-61 238.8 243 58.4
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 5.5e-61 238.4 170 74.7
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.5e-61 238.4 218 64.2
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 7.2e-61 238.0 236 58.1
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 7.2e-61 238.0 236 58.1
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 9.4e-61 237.7 197 66.0
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 9.4e-61 237.7 236 58.9
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.2e-60 237.3 244 57.0
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.6e-60 236.9 196 65.8
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.1e-60 236.5 183 70.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.1e-60 236.5 237 57.8
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 2.7e-60 236.1 237 57.8
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.7e-60 236.1 211 63.0
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.6e-60 235.7 241 58.5
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 6.1e-60 235.0 232 59.5
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 8.0e-60 234.6 188 68.1
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.0e-59 234.2 244 58.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.4e-59 233.8 187 67.4
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 2.3e-59 233.0 170 74.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 4.0e-59 232.3 239 59.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 4.0e-59 232.3 183 66.1
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 8.8e-59 231.1 244 56.6
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 8.8e-59 231.1 188 66.0
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.1e-58 230.7 250 56.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.6e-58 229.6 231 58.4
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 3.3e-58 229.2 204 62.7
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 4.4e-58 228.8 184 67.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 7.5e-58 228.0 182 65.9
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 7.5e-58 228.0 182 65.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 7.5e-58 228.0 182 65.9
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.5e-58 228.0 173 70.5
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 9.7e-58 227.6 182 65.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.2e-57 226.5 243 55.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.8e-57 225.3 182 65.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 6.3e-57 224.9 188 65.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.2e-57 224.6 184 66.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.2e-57 224.6 184 66.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.4e-56 223.8 247 55.5
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 7.0e-56 221.5 183 66.7
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 7.0e-56 221.5 184 64.7
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.2e-55 220.7 185 63.8
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.0e-55 219.9 265 50.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.0e-54 217.6 185 63.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.7e-54 216.9 244 54.1
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 3.8e-54 215.7 245 53.1
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 7.2e-53 211.5 244 53.3
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.2e-52 210.7 204 61.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.2e-52 210.7 186 65.6
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.0e-51 207.6 246 52.0
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.4e-51 207.2 153 71.9
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.8e-51 206.8 182 59.9
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.8e-51 204.9 170 64.1
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.2e-50 204.1 149 72.5
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.3e-49 200.7 216 54.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.0e-46 191.0 136 71.3
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.8e-46 189.1 192 57.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.6e-44 182.6 264 48.1
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.7e-41 173.7 147 62.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.7e-41 173.7 125 74.4
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.6e-39 167.2 183 53.6
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.6e-39 167.2 137 62.8
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 3.0e-30 136.3 260 40.0
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 9.5e-29 131.3 174 48.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 8.0e-28 128.3 101 62.4
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.4e-27 127.5 229 39.7
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.3e-27 126.7 235 39.6
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.1e-27 126.3 227 41.0
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 3.1e-27 126.3 215 42.8
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 8.9e-27 124.8 101 60.4
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.0e-26 123.6 136 50.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.4e-26 122.9 101 59.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 7.5e-26 121.7 96 62.5
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 9.8e-26 121.3 217 40.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 9.8e-26 121.3 123 51.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 3.7e-25 119.4 106 57.5
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 4.1e-24 115.9 97 60.8
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 3.5e-23 112.8 97 66.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 5.0e-22 109.0 153 45.1
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.3e-21 106.3 104 57.7
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.2e-20 104.4 82 67.1
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.6e-20 102.8 75 66.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 9.8e-18 94.7 162 40.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 2.2e-17 93.6 136 39.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 6.0e-15 85.5 115 47.8
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.3e-13 78.6 136 39.0
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.3e-09 67.8 163 35.6
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 3.2e-08 63.2 51 64.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.2e-08 63.2 244 28.3
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 7.8e-07 58.5 53 64.2


User provided reference genes

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