Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.3e-274 949.1 477 100.0
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 5.5e-185 651.4 474 73.2
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 6.8e-167 591.3 477 69.0
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.5e-161 572.8 479 64.3
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 4.6e-155 552.0 452 67.0
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 5.0e-154 548.5 501 62.1
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 6.6e-154 548.1 477 62.1
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.3e-153 545.8 477 62.3
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 7.3e-153 544.7 478 62.8
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.8e-151 540.0 452 64.8
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.3e-151 539.7 480 61.7
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 4.0e-151 538.9 478 61.5
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 5.2e-151 538.5 478 61.3
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 5.2e-151 538.5 477 61.2
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 5.2e-151 538.5 476 60.9
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 3.4e-150 535.8 478 60.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 4.4e-150 535.4 479 61.4
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.9e-148 530.0 477 61.8
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 6.0e-147 525.0 477 60.8
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 7.8e-147 524.6 477 59.1
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.3e-146 523.1 483 59.6
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.6e-146 521.5 477 60.2
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.5e-145 520.4 532 56.0
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.5e-145 519.6 484 61.0
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 5.6e-145 518.5 477 59.7
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.6e-144 516.9 485 59.0
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 2.1e-144 516.5 520 56.0
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.8e-144 516.2 480 60.4
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 4.7e-144 515.4 477 58.9
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.2e-144 515.0 477 57.9
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 8.1e-144 514.6 478 58.6
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 1.1e-143 514.2 479 59.1
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.8e-143 513.5 477 57.7
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 4.0e-143 512.3 500 58.2
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.0e-142 510.0 477 57.4
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 2.0e-142 510.0 478 57.9
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 9.8e-142 507.7 476 59.7
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.7e-141 506.9 500 56.8
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.9e-141 506.1 477 56.8
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-140 504.2 477 56.8
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.4e-140 503.8 477 56.6
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.7e-139 499.6 480 57.1
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 5.1e-138 495.4 477 57.9
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 5.1e-138 495.4 478 57.7
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 6.6e-138 495.0 478 58.2
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.9e-137 493.4 508 55.1
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 2.5e-137 493.0 450 63.6
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.2e-136 490.7 479 56.4
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.8e-136 489.6 479 56.4
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.7e-136 488.8 477 58.7
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 8.1e-136 488.0 478 58.4
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.4e-135 487.3 478 59.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.8e-135 486.9 477 55.3
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.8e-135 486.9 479 56.2
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.0e-134 483.4 476 57.1
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.7e-133 480.3 478 55.2
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 4.9e-133 478.8 437 60.4
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 2.4e-132 476.5 478 55.2
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 5.4e-132 475.3 481 56.3
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 7.1e-132 474.9 540 52.6
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 9.2e-132 474.6 503 54.1
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.9e-130 469.2 482 55.6
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.0e-126 456.8 500 52.8
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.7e-125 453.8 476 55.0
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 4.3e-121 439.1 402 60.7
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 4.3e-121 439.1 478 51.5
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 2.1e-120 436.8 503 49.7
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.2e-118 431.0 504 49.0
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 6.4e-117 425.2 489 52.6
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 5.4e-116 422.2 481 52.4
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 7.1e-116 421.8 474 51.7
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.2e-115 421.0 379 60.2
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 1.6e-115 420.6 477 49.5
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.6e-115 420.6 507 51.3
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.0e-114 416.4 514 48.4
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 6.7e-114 415.2 478 50.8
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 2.5e-113 413.3 526 47.7
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.6e-112 410.6 488 51.0
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.8e-112 409.1 431 54.1
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.4e-111 407.5 495 48.9
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 3.1e-111 406.4 484 52.5
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 5.3e-111 405.6 489 50.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 6.9e-111 405.2 488 50.6
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 3.4e-110 402.9 543 47.0
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 7.6e-110 401.7 487 50.7
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 1.7e-109 400.6 487 49.9
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.7e-109 400.6 499 49.3
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.7e-109 400.6 543 46.6
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 2.2e-109 400.2 494 50.8
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.2e-108 396.0 475 50.7
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 6.0e-107 392.1 545 45.7
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 7.9e-107 391.7 364 59.1
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 9.6e-105 384.8 363 57.9
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 4.8e-104 382.5 498 47.4
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 6.2e-104 382.1 569 43.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 3.1e-103 379.8 487 47.4
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 4.0e-103 379.4 490 47.3
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 1.3e-101 374.4 519 46.2
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 8.4e-101 371.7 481 47.2
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-99 367.9 490 46.3
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.8e-98 364.0 329 61.7
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 1.5e-97 360.9 568 41.4
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 5.5e-92 342.4 479 46.6
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 7.2e-92 342.0 525 42.1
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.1e-91 339.0 529 42.0
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.4e-79 301.2 271 63.1
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.7e-75 287.0 329 50.5
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 9.1e-63 245.4 173 70.5
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 6.5e-61 239.2 199 62.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.5e-60 237.3 360 41.1
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 9.4e-60 235.3 199 61.8
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 2.0e-57 227.6 255 51.0
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.3e-56 224.9 196 60.7
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.3e-56 224.9 264 51.1
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.0e-50 205.3 483 34.0
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.8e-50 204.5 216 52.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.8e-48 197.2 515 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.0e-42 176.8 506 32.4
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.7e-40 170.2 419 34.4
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.1e-36 158.7 155 56.8
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.0e-33 147.9 468 27.8
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.4e-33 147.1 199 42.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.2e-32 144.4 410 32.2
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.7e-30 137.5 456 28.3
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.3e-29 135.2 376 30.1
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 3.0e-29 134.0 108 63.0
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 4.3e-28 130.2 136 52.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.8e-26 124.8 465 26.5
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 6.8e-26 122.9 174 40.8
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.4e-15 87.8 114 44.7
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.7e-14 84.3 80 57.5
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 6.2e-11 73.2 41 80.5


User provided reference genes

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