Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 0.0e+00 1078.9 546 100.0
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.9e-238 828.6 550 76.5
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 6.7e-227 790.8 535 74.0
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.1e-213 746.9 532 70.9
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 5.3e-208 728.0 531 69.3
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 7.7e-207 724.2 532 67.9
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.9e-206 722.2 544 69.3
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.9e-205 719.5 540 67.2
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.6e-204 716.5 532 68.8
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.9e-203 711.8 532 68.2
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.0e-202 709.5 546 67.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.0e-202 709.5 532 67.3
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.3e-201 706.8 532 66.9
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 2.2e-201 706.1 541 66.7
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.8e-200 703.0 535 66.4
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.5e-199 699.9 541 65.8
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 3.4e-199 698.7 531 67.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.5e-198 694.1 531 67.2
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.2e-196 690.3 533 64.7
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.1e-196 689.5 533 64.7
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.6e-196 688.7 533 64.4
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 4.7e-196 688.3 534 65.9
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 4.7e-196 688.3 534 64.8
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 1.4e-195 686.8 531 65.0
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.3e-195 686.0 531 66.1
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 3.0e-195 685.6 532 65.4
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.0e-195 685.6 531 65.0
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 3.9e-195 685.3 539 64.9
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 5.2e-195 684.9 542 64.9
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.7e-195 684.5 539 64.9
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.0e-194 682.9 564 62.4
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 3.3e-194 682.2 531 65.0
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 7.4e-194 681.0 533 64.7
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.7e-193 678.7 532 65.4
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.1e-192 677.2 531 63.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 9.1e-192 674.1 528 65.9
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 7.7e-191 671.0 533 64.4
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 3.8e-190 668.7 535 62.1
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.5e-189 666.0 558 61.8
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 4.2e-189 665.2 532 63.9
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 5.5e-189 664.8 534 62.2
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 5.5e-189 664.8 541 62.1
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 7.2e-189 664.5 539 63.5
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.6e-188 663.3 535 64.1
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.1e-188 662.9 532 62.4
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.7e-188 662.5 533 63.2
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 1.4e-187 660.2 532 63.0
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.3e-187 659.4 540 63.9
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 3.0e-187 659.1 586 60.1
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.3e-186 655.6 533 63.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 9.7e-186 654.1 537 61.5
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.8e-185 652.5 531 62.7
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.8e-185 652.5 547 61.4
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 4.8e-185 651.7 539 62.7
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 2.4e-184 649.4 539 60.9
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.4e-184 649.4 531 61.8
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.0e-183 646.4 530 61.3
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.7e-183 646.0 538 61.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.9e-182 642.5 544 60.5
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 6.5e-182 641.3 530 60.9
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 3.2e-181 639.0 537 62.0
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 9.4e-181 637.5 538 60.6
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 3.6e-180 635.6 539 60.3
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.0e-179 634.0 539 61.4
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.0e-179 632.5 539 60.7
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.5e-178 630.2 534 61.2
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 2.6e-178 629.4 531 59.9
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 9.8e-178 627.5 590 56.3
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 4.5e-175 618.6 540 59.4
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.9e-173 613.2 594 56.9
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 4.2e-173 612.1 538 58.6
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 9.5e-173 610.9 451 67.6
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 2.1e-172 609.8 554 58.8
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 8.8e-171 604.4 505 62.6
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.0e-170 603.2 533 59.3
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 2.6e-170 602.8 558 56.8
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 5.4e-168 595.1 533 57.6
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.9e-165 586.6 533 57.4
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 4.0e-163 578.9 533 56.8
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 4.0e-163 578.9 533 56.8
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 6.8e-163 578.2 448 65.4
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.4e-162 575.5 531 56.5
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.7e-161 573.5 502 59.4
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.8e-160 570.1 437 65.7
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.2e-160 569.3 537 55.9
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.3e-155 553.1 537 54.6
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 8.9e-155 551.2 533 55.2
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 4.1e-152 542.3 406 68.0
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.3e-150 536.6 414 65.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.3e-149 531.6 405 66.2
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.7e-143 513.1 536 52.8
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 7.6e-138 495.0 536 52.1
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.2e-132 477.6 569 50.1
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.1e-128 464.5 531 48.0
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.0e-126 458.0 543 46.4
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.1e-125 454.5 546 46.5
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 5.1e-110 402.5 350 60.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.9e-109 400.6 350 60.3
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 5.6e-109 399.1 288 68.8
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 3.1e-107 393.3 503 45.9
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.5e-98 364.4 288 64.6
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.9e-97 360.1 555 39.6
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.3e-92 344.7 476 41.8
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 5.0e-89 332.8 557 37.3
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 4.1e-83 313.2 287 59.2
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.8e-75 287.7 204 71.1
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.6e-74 283.9 409 42.3
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.2e-72 276.6 212 65.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.8e-70 271.2 564 34.8
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.3e-60 238.4 573 31.2
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 3.3e-56 223.8 549 32.1
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 1.6e-55 221.5 173 66.5
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 8.6e-49 199.1 154 63.0
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 3.3e-48 197.2 176 54.0
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.8e-46 191.4 129 72.1
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.8e-46 191.4 135 68.9
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.4e-38 165.2 140 60.7
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 5.4e-35 153.3 123 60.2
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.6e-31 141.7 113 63.7
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 3.7e-28 130.6 89 71.9
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 8.3e-28 129.4 91 69.2
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.2e-26 125.6 100 66.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.1e-25 120.2 458 26.2
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 6.6e-17 93.2 200 34.5
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 7.3e-16 89.7 88 55.7
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 8.1e-15 86.3 71 62.0
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 2.4e-14 84.7 111 48.6
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.3e-14 83.6 87 52.9
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.3e-14 83.6 87 52.9
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.0e-13 81.6 75 53.3
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 5.8e-13 80.1 138 41.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-10 72.4 316 26.9
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.5e-08 65.5 73 46.6
Phvul.004G142700 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 3.3e-08 64.3 234 31.2
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 1.4e-06 58.9 272 25.7
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.4e-06 58.9 239 28.9
VMungo0720G0904 Vigna mungo HOM05D000311 ORTHO05D000183 1.4e-06 58.9 169 31.4
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 1.8e-06 58.5 74 45.9
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 3.1e-06 57.8 325 27.1
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 4.0e-06 57.4 49 53.1
Mapoly0004s0193 Marchantia polymorpha HOM05D016773 ORTHO05D019668 5.3e-06 57.0 307 25.1


User provided reference genes

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