Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 0.0e+00 1157.1 639 100.0
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 8.1e-216 754.2 668 66.8
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.3e-192 677.2 629 64.5
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 8.5e-173 611.3 401 83.3
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.7e-160 569.3 653 54.7
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.9e-156 557.0 650 53.1
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.1e-155 553.5 663 53.1
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.3e-153 546.2 666 52.0
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.2e-152 541.6 673 52.9
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.1e-151 539.7 670 50.9
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 3.0e-146 523.1 648 53.7
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 1.1e-143 514.6 664 52.3
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.2e-142 511.1 675 49.2
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 2.5e-140 503.4 664 49.7
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 7.2e-140 501.9 659 51.1
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 3.6e-139 499.6 664 47.7
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 4.7e-139 499.2 663 50.1
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.3e-138 496.9 659 49.9
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.3e-138 496.9 681 50.5
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.5e-137 494.2 686 50.0
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 1.5e-137 494.2 657 49.3
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 3.4e-137 493.0 336 80.4
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 4.4e-137 492.7 645 48.7
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 9.8e-137 491.5 669 48.4
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 2.8e-136 490.0 683 49.2
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.4e-135 487.6 656 50.3
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.8e-135 487.3 687 47.2
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.1e-135 486.1 653 50.7
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.6e-134 484.2 661 48.4
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.0e-134 483.8 692 48.0
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.9e-134 482.3 661 48.4
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 7.8e-134 481.9 654 49.8
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.3e-133 480.3 664 47.7
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.9e-133 479.9 641 50.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 5.0e-133 479.2 345 78.0
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.6e-133 478.8 698 46.7
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.9e-132 477.2 698 46.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.9e-132 477.2 660 47.6
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 4.7e-131 472.6 645 52.7
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.4e-130 471.1 660 46.7
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-130 471.1 666 48.5
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.8e-130 470.7 666 48.8
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.8e-130 470.7 661 47.5
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.8e-130 470.7 673 46.7
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.0e-130 469.9 671 47.7
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 4.0e-130 469.5 479 58.2
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 6.8e-130 468.8 668 49.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.5e-129 467.6 650 47.7
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 3.4e-129 466.5 667 46.8
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 9.8e-129 464.9 671 46.1
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.3e-128 464.5 673 47.4
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.1e-127 459.5 379 67.8
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 4.1e-127 459.5 629 48.2
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 5.4e-127 459.1 676 46.9
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 9.2e-127 458.4 677 47.7
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.3e-125 454.5 674 46.1
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.3e-125 454.5 662 47.4
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.7e-125 454.1 629 48.3
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 3.0e-125 453.4 608 49.8
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 3.9e-125 453.0 665 46.3
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 5.0e-125 452.6 664 47.4
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 1.9e-124 450.7 661 46.3
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.3e-124 449.9 723 43.8
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 4.3e-124 449.5 666 46.1
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 7.3e-124 448.7 689 45.1
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-123 448.0 657 45.8
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.6e-123 447.6 676 46.0
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 8.0e-123 445.3 622 48.9
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.8e-122 444.1 674 46.4
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 5.2e-122 442.6 677 47.1
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 2.6e-121 440.3 675 46.1
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 9.8e-121 438.3 669 46.3
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 3.7e-120 436.4 653 47.3
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 6.4e-120 435.6 677 46.4
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.4e-120 435.6 663 45.1
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 3.2e-119 433.3 645 45.9
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 6.0e-118 429.1 659 45.8
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.0e-117 428.3 630 46.7
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 9.5e-116 421.8 670 43.7
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 9.5e-116 421.8 730 42.3
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 2.1e-115 420.6 667 44.5
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.4e-114 417.9 677 45.6
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.3e-114 417.2 598 49.8
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 6.8e-114 415.6 665 45.1
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.5e-110 403.3 686 43.4
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 3.9e-109 399.8 614 44.3
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 6.6e-109 399.1 660 43.3
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 8.6e-109 398.7 647 46.1
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.2e-107 394.8 380 60.8
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 4.7e-107 392.9 656 43.3
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.2e-107 392.5 666 43.2
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.5e-105 387.9 579 45.8
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.8e-105 386.0 464 52.8
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 4.9e-104 382.9 519 48.6
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 6.4e-104 382.5 652 42.8
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.4e-103 381.3 669 42.3
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.1e-103 379.0 674 42.3
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.6e-102 377.9 682 41.5
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.0e-101 375.2 387 56.1
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.0e-101 375.2 370 58.1
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 5.1e-101 372.9 648 43.1
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 9.9e-97 358.6 648 40.4
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.2e-89 335.1 373 51.5
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 7.4e-60 236.1 218 60.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.7e-60 235.7 444 41.9
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 2.2e-56 224.6 469 36.2
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 8.5e-56 222.6 271 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 4.2e-55 220.3 319 40.1
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.7e-54 216.9 264 50.8
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 3.3e-52 210.7 125 81.6
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 2.2e-51 208.0 322 41.3
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.9e-50 203.0 446 40.4
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 3.8e-48 197.2 500 33.4
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 6.5e-48 196.4 225 53.8
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 5.5e-47 193.4 485 30.5
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.0e-45 189.1 112 83.9
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 8.8e-45 186.0 116 81.0
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.1e-44 185.7 112 83.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.4e-42 178.7 541 29.2
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 3.1e-42 177.6 193 53.4
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 1.0e-37 162.5 111 73.9
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 2.3e-37 161.4 118 72.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 2.6e-36 157.9 112 73.2
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 7.7e-33 146.4 461 31.7
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.6e-28 131.3 89 69.7
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.4e-28 130.6 93 73.1
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 9.8e-28 129.4 332 36.4
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 3.7e-27 127.5 90 70.0
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 5.4e-26 123.6 139 56.8
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 5.4e-26 123.6 110 52.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.6e-25 122.1 139 58.3
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 3.5e-25 120.9 138 58.7
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 5.0e-24 117.1 224 34.8
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.2e-21 107.1 342 26.6
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.9e-15 88.6 82 59.8
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 7.3e-15 86.7 140 42.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 1.8e-13 82.0 382 27.2
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 7.0e-10 70.1 53 64.2
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 1.2e-09 69.3 147 28.6
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.1e-06 58.5 39 71.8


User provided reference genes

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