Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 4.0e-113 411.4 200 100.0
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 9.1e-65 250.8 204 70.1
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-56 223.4 203 63.1
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.2e-53 213.8 211 62.1
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.4e-44 183.7 205 58.0
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 4.0e-44 182.2 197 57.9
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 3.1e-41 172.6 207 52.7
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.0e-40 169.9 167 55.1
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 2.7e-40 169.5 206 52.4
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 5.6e-38 161.8 192 53.6
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.2e-37 160.6 198 50.5
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 8.0e-37 157.9 174 53.4
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 8.0e-37 157.9 194 52.1
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.0e-36 157.5 168 54.2
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.3e-36 156.4 195 50.3
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.0e-36 156.0 153 53.6
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.0e-36 156.0 167 53.9
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.8e-36 154.8 184 48.4
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.5e-35 153.7 176 53.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.0e-35 153.3 167 53.9
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 7.5e-35 151.4 176 51.1
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 9.8e-35 151.0 175 51.4
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 9.8e-35 151.0 151 52.3
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.7e-34 150.2 195 49.7
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.2e-34 149.8 160 55.0
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 8.3e-34 147.9 178 50.6
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 1.8e-33 146.7 190 47.9
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.4e-33 146.4 182 46.7
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.4e-33 146.4 182 46.7
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 4.1e-33 145.6 209 44.5
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 5.4e-33 145.2 149 53.7
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.6e-32 143.7 227 46.3
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.0e-32 143.3 168 51.2
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.0e-32 143.3 192 51.0
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 3.5e-32 142.5 193 42.5
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 3.5e-32 142.5 158 54.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.0e-32 141.7 200 44.5
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 7.8e-32 141.4 191 44.0
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 7.8e-32 141.4 184 52.2
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.3e-31 140.6 197 46.7
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 3.0e-31 139.4 139 54.7
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.9e-30 136.7 183 47.0
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 4.3e-30 135.6 171 50.9
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 7.3e-30 134.8 211 46.0
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 9.5e-30 134.4 197 44.7
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 9.5e-30 134.4 168 47.6
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 9.5e-30 134.4 212 43.9
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-29 134.0 130 54.6
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.6e-29 133.7 167 52.1
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.6e-29 133.7 177 46.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 1.6e-29 133.7 195 46.7
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 2.1e-29 133.3 164 47.6
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.8e-29 132.9 141 53.2
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 4.7e-29 132.1 130 55.4
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-28 131.0 157 51.0
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 2.3e-28 129.8 161 50.9
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 2.3e-28 129.8 199 42.7
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.1e-28 129.4 199 41.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 5.2e-28 128.6 178 44.9
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 6.8e-28 128.3 195 43.1
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.6e-27 126.3 184 40.8
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 4.4e-27 125.6 212 45.3
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.3e-26 124.0 190 43.2
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.3e-26 124.0 161 49.1
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 8.3e-26 121.3 147 48.3
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.1e-25 120.9 202 40.1
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.4e-25 120.6 180 47.8
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-25 119.0 161 45.3
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-25 119.0 161 45.3
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 4.1e-25 119.0 212 40.1
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 5.4e-25 118.6 176 47.7
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 5.4e-25 118.6 196 40.3
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 9.2e-25 117.9 191 41.4
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.6e-24 117.1 165 45.5
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.6e-24 117.1 178 43.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 3.5e-24 115.9 170 42.9
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 4.6e-24 115.5 176 46.0
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 4.6e-24 115.5 161 42.9
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.0e-24 115.2 178 43.8
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 7.8e-24 114.8 157 48.4
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 7.8e-24 114.8 170 44.7
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 7.8e-24 114.8 142 49.3
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 7.8e-24 114.8 155 44.5
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.0e-23 114.4 175 44.6
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.3e-23 114.0 205 41.5
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.3e-23 114.0 161 46.6
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-23 113.6 183 43.2
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.7e-23 113.6 165 45.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.9e-23 112.5 157 46.5
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 5.0e-23 112.1 172 45.9
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 5.0e-23 112.1 170 44.7
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 6.6e-23 111.7 178 41.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 6.6e-23 111.7 178 41.0
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.6e-23 111.7 179 41.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 8.6e-23 111.3 158 43.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 8.6e-23 111.3 153 47.7
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.1e-22 110.9 156 46.8
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.1e-22 110.9 170 45.3
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.9e-22 110.2 160 44.4
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 3.3e-22 109.4 216 38.4
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 5.6e-22 108.6 198 39.4
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 5.6e-22 108.6 124 50.0
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.2e-21 107.5 160 41.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-21 107.5 170 44.7
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.6e-21 107.1 158 43.7
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.8e-21 106.3 169 41.4
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.6e-21 105.9 149 47.7
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 4.7e-21 105.5 170 44.1
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 6.2e-21 105.1 157 42.0
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.1e-21 104.8 172 40.1
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.4e-20 104.0 146 46.6
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.8e-20 103.6 158 46.8
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 2.3e-20 103.2 177 42.4
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 2.3e-20 103.2 177 42.4
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 5.2e-20 102.1 181 44.2
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.8e-20 101.7 179 39.7
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.2e-19 100.9 154 43.5
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-19 100.9 154 43.5
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-19 100.9 154 43.5
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.2e-19 100.9 226 38.5
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.0e-19 100.1 152 44.1
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.0e-19 100.1 150 40.0
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.8e-19 98.6 158 43.7
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 2.2e-18 96.7 184 39.7
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.7e-18 95.9 196 40.3
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 8.3e-18 94.7 154 42.2
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 4.1e-17 92.4 178 36.5
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 4.1e-17 92.4 163 40.5
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 5.4e-17 92.0 193 39.4
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 6.6e-15 85.1 163 38.0
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.5e-14 83.2 184 39.7
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.5e-14 83.2 183 38.8
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 5.6e-14 82.0 203 30.5
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 3.6e-13 79.3 187 33.7
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.1e-12 77.8 176 35.2
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 3.1e-12 76.3 163 36.2
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 1.2e-11 74.3 142 41.5
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 4.4e-11 72.4 133 39.8
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 5.8e-11 72.0 153 34.0
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 7.6e-11 71.6 142 38.0
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 7.6e-11 71.6 205 31.2
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.7e-10 70.5 140 38.6
SGA_v2.0_scaffold145G35996 Striga asiatica HOM05D005065 ORTHO05D005944 3.9e-07 59.3 89 44.9
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 8.7e-07 58.2 148 31.8
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.9e-06 57.0 55 50.9
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 3.3e-06 56.2 144 32.6
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.6e-06 55.5 146 32.9


User provided reference genes

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