Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 7.3e-89 330.5 162 100.0
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 5.5e-60 234.6 164 72.0
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 7.1e-60 234.2 163 72.4
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 7.9e-59 230.7 164 70.7
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 4.3e-49 198.4 168 59.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 3.7e-48 195.3 200 52.5
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.6e-43 179.9 162 59.3
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.4e-38 162.2 148 57.4
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.5e-36 156.0 163 49.7
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 5.5e-36 154.8 163 49.7
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 4.7e-35 151.8 163 47.2
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 6.1e-35 151.4 162 48.1
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 6.1e-35 151.4 164 48.8
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 7.9e-35 151.0 162 48.8
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.0e-34 150.6 162 47.5
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.3e-34 149.4 168 46.4
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.3e-34 149.4 163 48.5
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.0e-34 149.1 165 50.3
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 8.8e-34 147.5 165 49.7
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.5e-33 146.7 163 49.1
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 2.0e-33 146.4 162 46.3
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 2.0e-33 146.4 163 49.1
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.0e-33 146.4 167 46.7
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.6e-33 146.0 162 46.9
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 4.4e-33 145.2 160 46.2
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 4.4e-33 145.2 162 46.9
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 4.4e-33 145.2 163 48.5
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 4.4e-33 145.2 163 48.5
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.3e-32 143.7 162 45.7
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.3e-32 143.7 162 46.9
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.3e-32 143.7 167 46.7
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.7e-32 143.3 162 45.7
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.2e-32 142.9 163 48.5
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.2e-32 142.9 162 46.3
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 2.8e-32 142.5 160 48.1
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 3.7e-32 142.1 162 46.3
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 8.2e-32 141.0 164 47.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 8.2e-32 141.0 164 47.0
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.1e-31 140.6 156 48.7
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.4e-31 140.2 162 46.3
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.8e-31 139.8 162 50.0
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 3.1e-31 139.0 167 45.5
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 4.1e-31 138.7 162 46.9
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 5.3e-31 138.3 160 41.9
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 5.3e-31 138.3 159 46.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.3e-31 138.3 164 45.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-30 137.1 164 47.6
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.6e-30 136.7 164 48.2
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 3.5e-30 135.6 160 42.5
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-30 135.6 162 43.2
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.5e-30 135.2 113 54.9
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 5.9e-30 134.8 172 45.3
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 7.7e-30 134.4 158 43.7
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.0e-29 134.0 163 45.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.0e-29 134.0 164 46.3
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.9e-29 132.5 164 45.7
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.9e-29 132.5 160 41.9
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 5.0e-29 131.7 160 46.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 5.0e-29 131.7 110 57.3
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.5e-28 130.2 163 46.0
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.5e-28 130.2 158 41.1
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 2.5e-28 129.4 173 42.8
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 2.5e-28 129.4 164 42.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 3.2e-28 129.0 162 43.8
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.2e-28 128.6 170 44.1
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-27 127.1 162 44.4
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.6e-27 126.7 166 44.0
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.1e-27 126.3 160 44.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.1e-27 126.3 165 45.5
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.7e-27 125.9 164 42.7
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 8.0e-27 124.4 163 42.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 8.0e-27 124.4 170 43.5
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.0e-26 124.0 162 42.6
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.4e-26 123.6 162 42.6
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.4e-26 123.6 162 42.6
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.4e-26 123.6 142 49.3
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.4e-26 123.6 173 41.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.8e-26 123.2 164 42.7
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.8e-26 123.2 160 43.8
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.0e-26 122.5 165 43.0
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.2e-26 121.7 163 44.8
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 6.7e-26 121.3 204 37.3
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 8.8e-26 120.9 158 41.1
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 8.8e-26 120.9 158 41.1
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.5e-25 120.2 158 41.1
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.5e-25 120.2 155 41.3
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.0e-25 119.8 160 42.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.6e-25 119.4 160 43.1
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.4e-25 118.6 165 41.2
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.4e-25 118.6 160 41.2
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 4.4e-25 118.6 158 40.5
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 4.4e-25 118.6 158 41.1
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 9.7e-25 117.5 169 43.2
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.7e-24 116.7 244 33.6
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 2.2e-24 116.3 158 40.5
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.8e-24 115.9 226 35.4
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 4.8e-24 115.2 158 40.5
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 6.3e-24 114.8 164 41.5
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.4e-23 112.8 162 41.4
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.4e-23 112.8 156 42.9
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 2.4e-23 112.8 160 41.2
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.1e-23 112.5 113 54.9
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.1e-23 112.5 159 44.0
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 4.1e-23 112.1 164 39.6
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 7.0e-23 111.3 159 41.5
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.6e-22 110.2 168 39.9
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 7.7e-22 107.8 192 35.4
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-21 106.7 164 36.0
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-21 106.7 164 36.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 2.2e-21 106.3 193 35.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 3.8e-21 105.5 154 40.9
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.5e-20 103.6 106 49.1
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 2.5e-20 102.8 267 30.7
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 5.5e-20 101.7 158 39.9
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.2e-19 100.5 81 56.8
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.1e-19 99.8 158 38.6
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-18 96.7 81 55.6
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 2.3e-18 96.3 154 41.6
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 5.2e-18 95.1 81 55.6
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 8.8e-18 94.4 155 38.7
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.2e-17 94.0 224 31.2
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-17 93.2 154 39.6
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 2.6e-17 92.8 155 38.1
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 2.6e-17 92.8 155 38.1
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.4e-17 92.4 160 37.5
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 5.7e-17 91.7 152 38.2
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 7.5e-17 91.3 159 35.8
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 7.5e-17 91.3 164 37.2
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 9.8e-17 90.9 160 36.9
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.3e-16 90.5 103 47.6
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.7e-16 90.1 161 36.6
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-16 90.1 152 38.2
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.7e-16 90.1 103 47.6
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.2e-16 89.7 101 48.5
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.2e-16 89.7 182 31.3
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.8e-16 89.4 103 47.6
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.8e-16 89.4 103 47.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.1e-15 87.4 158 36.1
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.4e-15 86.3 158 37.3
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 3.1e-15 85.9 103 46.6
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 3.5e-14 82.4 73 56.2
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 2.9e-13 79.3 162 30.9
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.8e-13 79.0 77 49.4
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 3.8e-13 79.0 162 34.6
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 3.8e-13 79.0 171 32.7
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 3.2e-12 75.9 78 48.7
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 4.7e-11 72.0 107 38.3
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 1.2e-09 67.4 79 39.2
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.4e-09 65.5 122 37.7
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 9.8e-09 64.3 42 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.4e-07 60.5 100 32.0
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.4e-07 59.7 95 35.8


User provided reference genes

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