Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 4.6e-278 960.7 517 100.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 2.4e-170 602.8 529 65.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.6e-169 600.1 529 64.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.5e-169 599.0 524 65.8
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 4.2e-146 522.3 561 54.5
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.3e-144 517.3 519 58.6
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 7.2e-138 495.0 513 56.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.1e-133 481.1 532 54.7
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.9e-131 473.0 548 54.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.1e-127 461.1 548 52.6
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 9.7e-127 458.0 455 59.8
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.7e-126 456.1 599 50.9
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.1e-125 452.6 524 53.8
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.2e-124 451.1 513 54.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.2e-124 451.1 546 53.1
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.0e-123 448.0 540 53.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.8e-123 446.0 561 50.8
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.1e-122 444.5 454 58.8
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 5.5e-122 442.2 550 53.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 8.0e-121 438.3 551 51.4
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.4e-120 437.6 453 58.3
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.8e-120 437.2 555 48.3
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.8e-120 437.2 560 50.2
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 5.2e-120 435.6 475 56.0
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.2e-120 435.6 538 51.5
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.5e-119 434.1 546 50.4
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.6e-119 433.3 553 51.9
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 5.7e-119 432.2 504 54.4
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.3e-118 431.0 539 51.6
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.7e-118 430.6 556 51.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.8e-118 429.1 567 49.7
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.1e-117 427.9 541 51.4
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 3.1e-117 426.4 546 50.0
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.1e-117 424.9 541 49.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 9.1e-117 424.9 546 49.5
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.2e-115 420.2 546 52.6
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.1e-114 417.9 538 49.6
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.9e-114 417.2 541 50.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 5.5e-114 415.6 541 50.6
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.7e-113 412.5 532 49.1
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.0e-112 411.4 548 50.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.0e-112 411.4 523 49.1
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.3e-111 406.4 554 49.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 7.5e-111 405.2 523 51.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.7e-110 404.1 558 49.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.8e-110 403.3 550 47.3
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.7e-110 402.9 534 51.3
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 6.3e-110 402.1 559 49.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.4e-109 401.0 541 47.1
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.8e-109 400.6 545 47.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.1e-109 399.4 520 50.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.3e-109 399.1 550 48.5
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.0e-109 398.7 519 49.5
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 9.1e-109 398.3 554 48.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.7e-108 396.7 551 49.2
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 3.5e-108 396.4 562 47.5
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.0e-107 394.8 536 50.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 8.5e-107 391.7 545 47.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 8.5e-107 391.7 554 48.2
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.5e-106 390.2 558 47.7
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 7.2e-106 388.7 495 50.5
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.1e-105 387.1 541 46.8
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 6.1e-105 385.6 561 47.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.5e-103 380.9 509 47.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.6e-103 380.2 558 47.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.6e-103 380.2 536 47.8
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 4.4e-103 379.4 556 46.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.7e-103 379.0 517 48.0
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.2e-102 377.1 551 47.2
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.8e-102 376.7 545 47.9
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.8e-102 375.9 517 49.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 6.3e-102 375.6 547 47.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.1e-101 374.8 466 48.7
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.4e-101 374.4 411 54.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.1e-101 372.9 553 48.1
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.1e-101 372.9 535 49.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.1e-101 372.9 529 48.2
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.6e-100 370.9 565 44.6
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.7e-100 368.6 621 42.8
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.3e-99 367.9 558 46.1
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.9e-99 366.7 548 45.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.8e-99 366.3 560 45.9
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.1e-98 364.8 553 47.2
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.5e-98 363.6 563 41.9
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 4.2e-98 362.8 552 46.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.0e-96 358.2 560 44.8
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.0e-96 356.3 519 48.0
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 5.2e-96 355.9 551 46.3
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.6e-95 353.6 549 45.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 5.7e-95 352.4 534 47.6
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 5.7e-95 352.4 519 48.2
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 6.3e-94 349.0 529 44.0
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.3e-90 336.7 536 44.4
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 9.5e-90 335.1 526 45.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.2e-89 334.7 528 45.6
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.6e-89 334.3 530 44.0
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.8e-89 333.6 524 46.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-89 333.2 532 43.8
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 6.1e-89 332.4 533 46.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 6.8e-88 328.9 340 57.6
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.5e-87 327.8 526 43.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.5e-87 327.8 532 45.3
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 3.4e-87 326.6 521 46.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.5e-87 325.5 530 44.0
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.3e-86 324.7 524 45.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 8.3e-86 322.0 531 45.6
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 8.3e-86 322.0 531 45.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.4e-85 320.5 562 43.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.2e-85 320.1 534 44.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-84 318.2 532 42.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.6e-84 317.8 724 38.4
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.6e-73 280.0 582 36.1
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.7e-70 270.0 299 53.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 7.8e-68 262.3 307 50.2
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 2.3e-67 260.8 317 49.2
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.5e-66 257.3 523 39.4
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.5e-66 255.4 522 38.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 7.6e-63 245.7 522 38.7
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 7.6e-63 245.7 522 38.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.7e-51 208.0 569 34.6
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.3e-48 196.4 176 59.1
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.4e-45 188.3 599 32.6
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 3.5e-44 183.7 384 36.2
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.3e-43 181.0 385 39.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.3e-42 176.8 516 32.9
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.8e-41 173.3 173 57.2
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 5.8e-39 166.4 218 45.4
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.6e-39 166.0 271 43.2
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.5e-37 159.8 422 33.9
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.8e-31 139.8 501 32.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.3e-30 138.7 722 27.1
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.5e-29 134.4 252 44.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.6e-28 130.2 117 59.8
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.4e-23 114.0 247 37.7
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 7.2e-21 106.3 224 38.8
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.6e-20 104.0 88 58.0
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.9e-20 102.8 125 53.6
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.8e-19 101.7 182 38.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 8.8e-19 99.4 458 28.6
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.3e-17 93.2 130 43.8
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-16 92.4 124 43.5
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.0e-14 85.9 93 49.5
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.4e-13 79.3 91 53.8
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.6e-12 78.6 178 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.1e-11 73.6 479 26.9
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.7e-09 67.4 177 32.8
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.4e-08 64.7 121 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.0e-08 63.2 220 30.5
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 9.1e-08 62.8 336 27.1
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.0e-06 59.3 96 40.6


User provided reference genes

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