Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25086 Avicennia marina HOM05D003147 ORTHO05D003245 1.9e-161 572.4 278 100.0
SalBow7G4374 Salvia bowleyana HOM05D003147 ORTHO05D003245 1.9e-44 183.7 332 40.7
Oeu049988.1 Olea europaea HOM05D003147 ORTHO05D003245 2.2e-37 160.2 337 35.9
Migut.C00571 Erythranthe guttata HOM05D003147 ORTHO05D003245 2.7e-30 136.7 281 37.0
SGA_v2.0_scaffold203G41549 Striga asiatica HOM05D003147 ORTHO05D003245 1.2e-22 111.3 299 34.8
Duzib041G0245 Durio zibethinus HOM05D003147 ORTHO05D003245 1.4e-15 87.8 98 53.1
Rhsim06G0050900 Rhododendron simsii HOM05D003147 ORTHO05D003245 1.4e-15 87.8 317 30.0
Prupe.1G434300 Prunus persica HOM05D003147 ORTHO05D003245 2.4e-15 87.0 286 30.8
Thecc.08G005700 Theobroma cacao HOM05D003147 ORTHO05D003245 2.7e-14 83.6 104 51.9
GSVIVG01009483001 Vitis vinifera HOM05D003147 ORTHO05D003245 1.7e-13 80.9 282 28.0
Manes.18G038100 Manihot esculenta HOM05D003147 ORTHO05D003245 3.0e-13 80.1 328 27.4
RcHm_v2.0_Chr6g0308051 Rosa chinensis HOM05D003147 ORTHO05D003245 3.9e-13 79.7 319 27.9
Cpa.g.sc49.28 Carica papaya HOM05D003147 ORTHO05D003245 1.5e-12 77.8 338 27.8
Lj5g0008284 Lotus japonicus HOM05D003147 ORTHO05D003245 1.9e-12 77.4 186 36.6
FAN24G2459 Fragaria x ananassa HOM05D003147 ORTHO05D003245 4.3e-12 76.3 313 27.8
Sabra14G0019100 Salix brachista HOM05D003147 ORTHO05D003245 5.6e-12 75.9 326 30.1
QL02p004661 Quercus lobata HOM05D003147 ORTHO05D003245 7.3e-12 75.5 154 37.0
Gohir.D06G017400 Gossypium hirsutum HOM05D003147 ORTHO05D003245 9.5e-12 75.1 138 37.0
Gorai.010G020300 Gossypium raimondii HOM05D003147 ORTHO05D003245 9.5e-12 75.1 138 37.0
Atru.chr13.705 Acer truncatum HOM05D003147 ORTHO05D003245 1.6e-11 74.3 152 36.8
FAN15G2685 Fragaria x ananassa HOM05D003147 ORTHO05D003245 1.6e-11 74.3 277 28.2
Actinidia22637 Actinidia chinensis HOM05D003147 ORTHO05D003245 2.1e-11 73.9 324 29.3
Ciclev10000309m.g Citrus clementina HOM05D003147 ORTHO05D003245 2.1e-11 73.9 120 39.2
TAR381G0416 Trochodendron aralioides HOM05D003147 ORTHO05D003245 2.1e-11 73.9 218 31.2
CiPaw.16G042800 Carya illinoinensis HOM05D003147 ORTHO05D003245 2.8e-11 73.6 149 34.9
FvH4_2g34310 Fragaria vesca HOM05D003147 ORTHO05D003245 2.8e-11 73.6 115 40.0
FAN20G0187 Fragaria x ananassa HOM05D003147 ORTHO05D003245 3.6e-11 73.2 115 39.1
HanXRQChr09g0267541 Helianthus annuus HOM05D003147 ORTHO05D003245 4.7e-11 72.8 146 35.6
Dinv35951 Davidia involucrata HOM05D003147 ORTHO05D003245 6.2e-11 72.4 94 50.0
Gohir.A06G019000 Gossypium hirsutum HOM05D003147 ORTHO05D003245 1.4e-10 71.2 138 36.2
Glyma.14G083400 Glycine max HOM05D003147 ORTHO05D003245 2.3e-10 70.5 94 47.9
Lsat_1_v5_gn_4_126480 Lactuca sativa HOM05D003147 ORTHO05D003245 2.3e-10 70.5 99 42.4
MD15G1081600 Malus domestica HOM05D003147 ORTHO05D003245 2.3e-10 70.5 100 44.0
Hma1.2p1_2046F.1_g312420 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 4.0e-10 69.7 130 40.8
Nitab4.5_0003091g0020 Nicotiana tabacum HOM05D003147 ORTHO05D003245 1.2e-09 68.2 165 35.2
CAN.G1337.32 Capsicum annuum HOM05D003147 ORTHO05D003245 3.4e-09 66.6 195 30.8
ECA232G3719 Erigeron canadensis HOM05D002191 ORTHO05D002292 4.4e-09 66.2 119 34.5
Sopen12g030700 Solanum pennellii HOM05D003147 ORTHO05D003245 4.4e-09 66.2 176 35.2
CsaV3_4G034370 Cucumis sativus L. HOM05D003147 ORTHO05D003245 5.8e-09 65.9 96 45.8
SHI08266 Sapria himalayana HOM05D003147 ORTHO05D003245 7.5e-09 65.5 126 40.5
Cc10_g04490 Coffea canephora HOM05D003147 ORTHO05D003245 9.8e-09 65.1 269 26.0
MELO3C016758.2 Cucumis melo HOM05D003147 ORTHO05D003245 9.8e-09 65.1 315 27.3
VMungo0647G1146 Vigna mungo HOM05D002191 ORTHO05D002292 9.8e-09 65.1 96 43.8
TPR.G3810 Trifolium pratense HOM05D003147 ORTHO05D003245 1.3e-08 64.7 119 32.8
Eucgr.F02335 Eucalyptus grandis HOM05D003147 ORTHO05D003245 1.7e-08 64.3 300 26.3
Nn5g30284 Nelumbo nucifera HOM05D003147 ORTHO05D003245 1.7e-08 64.3 143 35.7
Sed0005207 Sechium edule HOM05D003147 ORTHO05D003245 1.7e-08 64.3 150 36.0
ClCG05G019930 Citrullus lanatus HOM05D003147 ORTHO05D003245 4.9e-08 62.8 321 27.1
PGR031G1159 Punica granatum HOM05D003147 ORTHO05D003245 4.9e-08 62.8 137 37.2
Carub.0001s3565 Capsella rubella HOM05D003147 ORTHO05D003245 1.1e-07 61.6 97 39.2
Lalb_Chr14g0368631 Lupinus albus HOM05D003147 ORTHO05D003245 1.4e-07 61.2 152 33.6
Thhalv10022632m.g Eutrema salsugineum HOM05D003147 ORTHO05D003245 1.9e-07 60.8 106 37.7
Medtr1g019290 Medicago truncatula HOM05D003147 ORTHO05D003245 2.4e-07 60.5 114 35.1
PGR031G1312 Punica granatum HOM05D003147 ORTHO05D003245 2.4e-07 60.5 143 36.4
arahy.Tifrunner.gnm1.ann1.191BIJ Arachis hypogaea HOM05D003147 ORTHO05D003245 3.2e-07 60.1 188 31.9
arahy.Tifrunner.gnm1.ann1.RR4AU3 Arachis hypogaea HOM05D003147 ORTHO05D003245 3.2e-07 60.1 188 31.9
CARHR036360 Cardamine hirsuta HOM05D003147 ORTHO05D003245 3.2e-07 60.1 117 36.8
Aqoxy6G01308 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 7.1e-07 58.9 311 25.1
COL.COLO4_26521 Corchorus olitorius HOM05D003147 ORTHO05D003245 7.1e-07 58.9 158 31.0
EL10Ac6g14533 Beta vulgaris HOM05D003147 ORTHO05D003245 2.1e-06 57.4 119 33.6
Glyma.17G241702 Glycine max HOM05D003147 ORTHO05D003245 3.5e-06 56.6 86 45.3
Phvul.001G022600 Phaseolus vulgaris HOM05D003147 ORTHO05D003245 3.5e-06 56.6 200 31.0
Sc15g0006080 Simmondsia chinensis HOM05D003147 ORTHO05D003245 3.5e-06 56.6 219 26.9
Zm00001eb019330 Zea mays HOM05D003147 ORTHO05D003245 3.5e-06 56.6 121 29.8
AL1G52900 Arabidopsis lyrata HOM05D003147 ORTHO05D003245 6.0e-06 55.8 95 35.8


User provided reference genes

Program Settings