Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 6.9e-128 460.7 239 100.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 3.7e-113 411.8 239 86.6
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 8.2e-113 410.6 239 87.0
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.4e-112 409.8 239 85.4
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 2.0e-111 406.0 239 84.9
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 4.5e-111 404.8 239 85.4
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 7.7e-111 404.1 239 85.4
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 2.5e-109 399.1 239 84.1
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 6.1e-108 394.4 236 83.5
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 7.9e-108 394.0 239 82.8
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.9e-107 391.7 233 84.5
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 5.2e-107 391.3 238 81.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 5.2e-107 391.3 239 83.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.2e-107 391.3 239 83.3
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 6.7e-107 391.0 233 85.4
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 8.8e-107 390.6 238 81.1
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.6e-106 389.0 236 81.4
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.6e-106 389.0 236 81.4
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-106 388.7 236 82.2
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.4e-106 388.3 239 82.8
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 2.2e-105 386.0 233 83.7
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.8e-105 385.6 239 79.1
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 3.7e-105 385.2 236 80.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 8.2e-105 384.0 233 84.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 8.2e-105 384.0 233 82.4
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.4e-104 382.5 238 82.8
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 9.1e-104 380.6 233 81.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 9.1e-104 380.6 236 82.6
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.2e-103 380.2 236 82.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 5.9e-103 377.9 239 81.2
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 7.7e-103 377.5 236 78.4
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 6.5e-102 374.4 241 79.7
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 8.5e-102 374.0 237 79.7
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.5e-101 372.5 238 76.9
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.1e-100 369.4 233 79.8
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.1e-100 369.4 238 73.9
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.7e-100 369.0 225 82.7
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 2.7e-100 369.0 236 78.8
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.6e-100 368.6 236 78.0
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 4.7e-100 368.2 233 79.4
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.7e-100 368.2 236 78.0
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.8e-99 366.3 238 78.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.3e-99 365.9 236 76.7
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 3.0e-99 365.5 310 64.2
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 5.2e-99 364.8 236 75.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 5.2e-99 364.8 204 88.2
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.0e-98 362.8 237 77.2
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.0e-98 362.8 233 78.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.6e-98 362.5 233 77.7
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.4e-98 361.7 236 74.6
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.4e-98 361.7 236 75.4
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 7.5e-98 360.9 236 75.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 7.5e-98 360.9 236 75.0
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 7.5e-98 360.9 238 77.3
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 7.5e-98 360.9 233 78.1
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 7.5e-98 360.9 233 77.7
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 9.7e-98 360.5 236 75.0
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.3e-97 360.1 282 68.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.7e-97 359.8 236 77.5
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-97 359.4 236 75.0
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-97 359.4 236 75.0
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 2.2e-97 359.4 236 75.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.2e-97 359.4 236 76.7
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.8e-97 359.0 238 75.6
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.1e-96 357.1 260 69.6
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.1e-96 357.1 236 73.7
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.4e-96 356.7 233 74.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.4e-96 356.7 233 76.8
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 7.0e-96 354.4 228 78.9
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.3e-94 350.1 272 67.3
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.7e-94 349.7 205 87.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 3.8e-94 348.6 204 84.8
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 5.0e-94 348.2 238 74.4
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 8.5e-94 347.4 236 72.0
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.7e-92 342.4 216 82.4
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 8.0e-92 340.9 219 77.2
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.0e-91 340.5 235 72.3
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.8e-91 337.8 239 74.1
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.4e-90 335.1 204 81.4
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 7.5e-90 334.3 220 76.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.3e-89 333.6 239 71.5
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.8e-89 332.4 233 75.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 6.3e-89 331.3 266 68.4
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.8e-88 329.7 205 82.0
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 3.1e-88 328.9 208 76.9
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.6e-87 326.6 233 70.0
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.7e-86 323.2 206 78.2
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 2.3e-86 322.8 231 73.6
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 2.3e-86 322.8 231 73.6
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.9e-86 322.4 236 66.9
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.0e-86 321.6 232 72.8
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 8.6e-86 320.9 237 67.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.9e-85 319.7 233 68.7
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 5.5e-85 318.2 203 78.8
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.8e-84 315.8 238 63.9
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.6e-84 315.5 232 65.5
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.0e-83 312.4 228 70.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.5e-82 310.1 221 71.0
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.0e-82 309.7 190 79.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.7e-81 306.6 196 74.5
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.8e-81 305.8 190 83.2
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 4.9e-81 305.1 170 88.2
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 5.4e-80 301.6 235 63.8
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 5.4e-80 301.6 235 64.7
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 5.4e-80 301.6 235 63.8
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 9.2e-80 300.8 226 65.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 9.2e-80 300.8 235 63.8
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 63.4
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.7e-78 296.6 233 58.4
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.3e-77 292.4 208 75.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.8e-75 286.6 188 75.0
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.2e-75 285.0 166 84.9
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.7e-73 278.9 232 57.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.8e-72 276.6 259 61.4
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.4e-72 276.2 236 57.6
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 5.4e-72 275.0 166 83.7
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.5e-71 272.3 218 61.5
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.6e-70 267.7 219 56.6
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-69 267.3 233 62.2
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.5e-69 266.9 153 85.6
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 6.8e-67 258.1 150 84.7
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 9.8e-66 254.2 219 58.4
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 9.8e-66 254.2 226 57.5
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.8e-63 244.6 204 65.2
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 5.8e-58 228.4 129 90.7
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 6.0e-55 218.4 167 62.9
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.9e-48 196.8 135 74.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 3.2e-48 196.1 135 71.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.4e-48 195.3 236 48.7
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 5.6e-45 185.3 236 45.8
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 3.1e-43 179.5 236 47.0
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 7.6e-42 174.9 111 77.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.9e-41 172.9 102 83.3
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 9.3e-40 167.9 106 75.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.7e-39 166.4 104 80.8
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.5e-37 159.8 265 42.3
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 8.1e-36 154.8 112 71.4
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 4.9e-33 145.6 133 51.1
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.4e-32 144.1 234 37.2
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.9e-32 143.7 76 90.8
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.4e-27 127.5 220 35.0
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.2e-23 114.4 74 73.0
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.5e-23 112.8 106 60.4
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.3e-22 110.2 233 32.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.3e-22 110.2 233 32.6
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 9.6e-21 104.8 68 77.9
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.9e-16 90.5 56 78.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 5.5e-16 89.0 51 84.3
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.5e-15 86.3 196 31.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.9e-15 85.1 89 46.1
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 4.3e-13 79.3 52 73.1
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.3e-12 77.8 49 75.5
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 6.3e-12 75.5 56 66.1
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-09 67.4 48 66.7
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.9e-08 63.9 50 56.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 9.4e-08 61.6 46 67.4
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 9.4e-08 61.6 52 51.9


User provided reference genes

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