Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 1.6e-70 269.2 126 100.0
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 1.9e-52 209.1 111 85.6
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 9.5e-52 206.8 111 85.6
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 2.1e-51 205.7 111 82.9
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 1.1e-47 193.4 118 70.3
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 1.9e-47 192.6 111 74.8
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 4.1e-47 191.4 111 74.8
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 9.2e-47 190.3 111 73.0
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 2.7e-46 188.7 111 75.7
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 1.0e-45 186.8 111 72.1
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 1.3e-45 186.4 109 75.2
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 3.9e-45 184.9 111 72.1
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 3.9e-45 184.9 111 72.1
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 8.6e-45 183.7 111 72.1
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 8.6e-45 183.7 111 70.3
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 8.6e-45 183.7 111 73.0
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 1.1e-44 183.3 111 71.2
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 1.5e-44 183.0 109 74.3
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 1.5e-44 183.0 111 71.2
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 1.9e-44 182.6 111 71.2
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 2.5e-44 182.2 109 70.6
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 2.5e-44 182.2 109 73.4
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 2.5e-44 182.2 111 73.0
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 3.3e-44 181.8 108 72.2
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 4.3e-44 181.4 111 69.4
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 4.3e-44 181.4 109 73.4
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 4.3e-44 181.4 111 70.3
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 5.6e-44 181.0 109 72.5
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 7.3e-44 180.6 109 72.5
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 7.3e-44 180.6 109 72.5
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 7.3e-44 180.6 109 72.5
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 7.3e-44 180.6 111 73.0
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 7.3e-44 180.6 109 72.5
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 9.5e-44 180.3 109 71.6
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 9.5e-44 180.3 111 68.5
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 9.5e-44 180.3 109 71.6
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 9.5e-44 180.3 111 72.1
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 9.5e-44 180.3 109 70.6
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 9.5e-44 180.3 107 73.8
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 1.2e-43 179.9 109 71.6
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 1.2e-43 179.9 107 72.0
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 1.6e-43 179.5 111 70.3
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 1.6e-43 179.5 109 70.6
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 2.1e-43 179.1 109 72.5
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.1e-43 179.1 111 68.5
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 2.1e-43 179.1 111 73.0
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 2.8e-43 178.7 109 69.7
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 2.8e-43 178.7 111 71.2
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 2.8e-43 178.7 109 69.7
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 3.6e-43 178.3 111 70.3
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 4.7e-43 177.9 109 70.6
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 4.7e-43 177.9 107 73.8
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 6.2e-43 177.6 111 66.7
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 8.1e-43 177.2 105 72.4
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 8.1e-43 177.2 111 67.6
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 1.1e-42 176.8 107 72.0
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.1e-42 176.8 111 67.6
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 1.1e-42 176.8 109 71.6
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 1.1e-42 176.8 111 67.6
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 1.4e-42 176.4 122 64.8
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 1.4e-42 176.4 107 71.0
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 1.8e-42 176.0 105 70.5
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 1.8e-42 176.0 109 69.7
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 2.3e-42 175.6 111 70.3
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 2.3e-42 175.6 111 69.4
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 3.1e-42 175.3 111 67.6
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 5.2e-42 174.5 111 67.6
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 6.8e-42 174.1 111 65.8
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 1.2e-41 173.3 111 69.4
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 1.2e-41 173.3 111 69.4
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 1.2e-41 173.3 106 70.8
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 1.5e-41 172.9 111 68.5
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 1.5e-41 172.9 108 70.4
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 2.0e-41 172.6 109 66.1
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 2.0e-41 172.6 105 70.5
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 2.0e-41 172.6 111 65.8
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 2.0e-41 172.6 111 67.6
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 3.4e-41 171.8 119 66.4
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 5.8e-41 171.0 103 72.8
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 5.8e-41 171.0 103 72.8
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 7.5e-41 170.6 111 66.7
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 7.5e-41 170.6 111 66.7
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 1.7e-40 169.5 111 66.7
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 8.3e-40 167.2 111 65.8
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 4.1e-39 164.9 124 58.9
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 7.1e-39 164.1 111 63.1
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 1.2e-38 163.3 98 71.4
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 2.7e-38 162.2 97 70.1
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 1.3e-37 159.8 107 65.4
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 4.3e-36 154.8 107 62.6
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 2.1e-35 152.5 125 57.6
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 7.6e-33 144.1 111 58.6
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 8.4e-32 140.6 121 55.4
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 1.4e-31 139.8 107 60.7
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 1.4e-31 139.8 90 65.6
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.5e-28 129.8 109 52.3
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.2e-27 126.7 108 54.6
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 3.6e-27 125.2 77 70.1
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 6.2e-27 124.4 106 53.8
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 3.4e-25 118.6 123 46.3
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 4.9e-16 88.2 97 41.2
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 3.0e-13 79.0 101 39.6
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 5.8e-09 64.7 87 34.5
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 5.8e-09 64.7 128 30.5
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 7.6e-09 64.3 88 34.1
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 7.6e-09 64.3 87 35.6
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 1.3e-08 63.5 87 33.3
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 1.3e-08 63.5 85 32.9
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.7e-08 63.2 87 36.8
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.7e-08 63.2 87 36.8
SMO119G0032 Selaginella moellendorffii HOM05D003340 ORTHO05D003775 2.2e-08 62.8 84 35.7
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 2.9e-08 62.4 84 32.1
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 2.9e-08 62.4 87 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2682 Anthoceros agrestis HOM05D003340 ORTHO05D003775 3.8e-08 62.0 89 30.3
PGR102G2107 Punica granatum HOM05D003340 ORTHO05D003775 3.8e-08 62.0 84 36.9
TWI74G0103 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 3.8e-08 62.0 124 29.0
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 4.9e-08 61.6 122 29.5
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 6.4e-08 61.2 87 34.5
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 6.4e-08 61.2 87 34.5
Hund21783 Selenicereus undatus HOM05D003340 ORTHO05D003775 6.4e-08 61.2 86 32.6
HPP92_013888 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.1e-07 60.5 90 34.4
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 1.4e-07 60.1 87 34.5
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 1.4e-07 60.1 87 34.5
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 1.4e-07 60.1 84 31.0
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 1.4e-07 60.1 85 34.1
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 2.4e-07 59.3 90 34.4
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.4e-07 59.3 87 33.3
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 4.2e-07 58.5 86 31.4
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 4.2e-07 58.5 126 27.0
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 4.2e-07 58.5 85 32.9
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 4.2e-07 58.5 85 32.9
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 4.2e-07 58.5 100 30.0
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 4.2e-07 58.5 93 32.3
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 5.5e-07 58.2 93 31.2
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 5.5e-07 58.2 114 33.3
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 7.1e-07 57.8 87 33.3
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 9.3e-07 57.4 126 27.0
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.6e-06 56.6 114 30.7
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 1.6e-06 56.6 111 28.8
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 2.1e-06 56.2 123 30.9
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 2.1e-06 56.2 88 34.1
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 2.1e-06 56.2 87 33.3
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.7e-06 55.8 121 29.8
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 2.7e-06 55.8 87 33.3
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 3.5e-06 55.5 94 34.0
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 3.5e-06 55.5 88 34.1
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.5e-06 55.5 126 27.0
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.5e-06 55.5 114 29.8
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.5e-06 55.5 126 27.0
Nn3g19971 Nelumbo nucifera HOM05D003340 ORTHO05D003775 3.5e-06 55.5 62 35.5
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 4.6e-06 55.1 86 31.4
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 4.6e-06 55.1 84 31.0
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 6.0e-06 54.7 87 34.5
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 6.0e-06 54.7 93 30.1
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 6.0e-06 54.7 126 28.6
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 6.0e-06 54.7 89 33.7
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 7.9e-06 54.3 82 31.7
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 7.9e-06 54.3 124 29.8
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 7.9e-06 54.3 114 28.9
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 7.9e-06 54.3 87 33.3
TWI32G0782 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 7.9e-06 54.3 87 33.3


User provided reference genes

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