Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 9.5e-245 849.7 430 100.0
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.2e-148 529.6 321 83.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 5.6e-144 515.0 321 81.3
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 5.8e-133 478.4 320 75.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 9.8e-133 477.6 320 74.7
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.1e-131 474.2 310 76.1
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.4e-131 473.8 304 77.3
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.4e-131 473.8 317 74.4
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.2e-131 472.6 320 73.1
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.2e-130 470.7 320 74.1
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 1.6e-130 470.3 324 74.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 7.8e-130 468.0 320 72.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.0e-129 467.6 320 72.5
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 2.3e-129 466.5 344 69.2
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.6e-127 460.3 305 74.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.6e-127 459.1 322 71.7
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.7e-127 458.8 329 70.5
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.2e-127 458.4 329 70.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 8.1e-127 458.0 306 73.5
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 2.3e-126 456.4 305 73.8
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 6.8e-126 454.9 306 73.5
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 8.9e-126 454.5 325 70.2
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.5e-125 453.8 304 73.7
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.7e-124 450.3 308 75.0
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.7e-124 450.3 321 70.7
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.2e-124 449.9 320 69.7
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 3.7e-124 449.1 320 71.2
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.3e-124 448.0 320 68.8
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.3e-124 448.0 320 70.0
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.3e-124 448.0 388 62.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 8.3e-124 448.0 320 70.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.4e-123 447.2 305 71.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.4e-123 446.4 320 70.0
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.4e-123 445.3 320 71.6
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 7.1e-123 444.9 320 71.2
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.2e-122 444.1 321 70.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 2.7e-122 443.0 325 67.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 6.0e-122 441.8 316 70.6
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.7e-121 440.3 321 68.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.3e-121 439.9 320 70.6
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.3e-121 439.9 321 70.1
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.0e-121 439.5 306 71.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 3.0e-121 439.5 306 71.9
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 8.6e-121 438.0 329 66.3
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.1e-120 437.6 313 70.3
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.1e-120 437.6 321 69.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 5.6e-120 435.3 316 69.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.2e-119 434.1 321 70.4
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.6e-119 433.7 306 70.6
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.1e-119 433.3 320 67.2
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 6.2e-119 431.8 352 65.1
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.1e-118 429.5 321 67.6
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 4.0e-118 429.1 324 66.7
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.2e-117 427.6 305 70.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.5e-117 427.2 325 70.8
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.0e-117 426.8 320 66.6
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.0e-117 426.8 317 68.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 3.4e-117 426.0 326 65.3
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.4e-117 425.6 320 66.2
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 7.6e-117 424.9 326 67.5
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.3e-116 424.1 270 77.0
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.3e-116 424.1 350 62.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.2e-116 423.3 347 64.6
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.9e-116 422.9 336 66.4
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 8.4e-116 421.4 346 63.6
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.4e-115 419.9 320 66.2
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.2e-115 419.5 306 69.3
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 7.1e-115 418.3 307 69.4
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.6e-114 417.2 320 67.2
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.6e-114 417.2 321 64.2
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.6e-114 417.2 320 65.6
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.7e-114 416.4 320 65.6
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 6.0e-114 415.2 320 65.0
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 6.0e-114 415.2 306 68.3
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.0e-113 414.5 277 74.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.3e-113 414.1 321 65.4
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.3e-113 413.3 333 64.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 5.1e-113 412.1 321 66.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.6e-113 411.8 326 64.4
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 8.7e-113 411.4 320 63.8
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 7.3e-112 408.3 320 63.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 9.6e-112 407.9 304 65.5
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.3e-111 407.5 321 66.0
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.6e-111 407.1 304 66.1
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 2.1e-111 406.8 320 63.1
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.8e-111 406.4 304 67.1
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 6.2e-111 405.2 304 65.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.1e-110 404.4 272 74.6
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 2.4e-110 403.3 311 65.0
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 5.3e-110 402.1 290 68.3
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 4.4e-109 399.1 304 64.8
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 5.8e-109 398.7 304 65.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 7.6e-109 398.3 369 58.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 7.6e-109 398.3 304 65.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.3e-108 397.5 320 65.6
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.4e-107 394.0 304 64.8
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 2.4e-107 393.3 320 62.2
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 3.2e-107 392.9 276 72.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.2e-107 392.5 321 65.4
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 9.3e-107 391.3 304 64.1
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.7e-106 389.8 330 60.9
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.6e-106 389.0 304 63.8
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 7.8e-106 388.3 279 69.5
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-105 387.9 277 69.3
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 3.9e-105 386.0 304 63.5
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.9e-104 383.6 314 63.7
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.3e-104 382.9 304 62.8
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 4.3e-104 382.5 283 67.8
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.6e-103 380.6 324 60.5
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 6.9e-102 375.2 304 62.5
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.5e-101 374.0 309 59.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 6.4e-100 368.6 314 61.8
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.4e-99 367.5 326 60.1
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 3.2e-99 366.3 266 70.7
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 3.5e-98 362.8 306 60.5
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 5.1e-97 359.0 322 59.3
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 8.7e-97 358.2 238 72.3
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.1e-94 351.3 301 59.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.8e-94 350.5 311 62.7
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.2e-93 347.8 248 68.1
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.0e-93 347.1 320 58.1
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.6e-93 346.7 306 57.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.0e-89 334.7 306 59.2
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-86 323.9 320 55.3
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 8.4e-84 315.1 225 70.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 4.8e-79 299.3 228 67.5
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.2e-75 286.6 458 43.0
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.7e-71 274.2 304 49.3
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.7e-71 273.1 204 66.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 5.3e-70 269.2 182 75.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 6.7e-65 252.3 165 77.6
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 4.4e-64 249.6 187 65.2
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.8e-63 246.1 208 62.5
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.4e-62 243.8 349 42.1
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.4e-62 243.8 221 57.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 4.5e-61 239.6 211 62.1
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.2e-60 237.3 183 63.4
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.8e-60 236.5 267 50.6
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.1e-59 235.0 248 54.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.9e-59 234.2 159 71.1
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.1e-58 230.7 194 60.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.8e-57 227.6 168 66.7
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.5e-56 224.6 323 42.1
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 7.4e-56 222.2 131 83.2
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.0e-53 214.2 145 73.8
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 5.9e-53 212.6 164 65.9
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.2e-52 210.7 139 76.3
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 5.5e-51 206.1 289 41.5
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.7e-50 203.0 227 48.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.5e-48 198.0 148 66.9
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.3e-47 192.6 192 55.2
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.2e-43 180.3 139 62.6
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.4e-41 174.9 316 39.9
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.0e-40 171.0 118 68.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 3.4e-40 170.2 148 59.5
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.4e-40 169.9 116 69.8
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.7e-36 157.9 179 43.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-31 140.2 182 46.2
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 3.7e-31 140.2 106 69.8
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.5e-27 127.5 117 58.1
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 7.3e-27 125.9 173 46.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.1e-26 124.4 124 50.8
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-24 117.5 142 47.9
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-20 104.8 79 64.6
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-19 101.7 61 75.4
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 4.7e-18 96.7 79 63.3
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.4e-16 90.5 85 56.5
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-13 81.3 61 65.6
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-13 81.3 61 63.9
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.7e-13 80.9 90 48.9
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-12 79.0 91 47.3
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.9e-11 74.7 43 81.4
SalBow6G4341 Salvia bowleyana HOM05D000670 ORTHO05D000529 5.2e-09 66.6 211 31.3


User provided reference genes

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