Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 1.9e-273 945.3 478 100.0
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 1.5e-222 776.2 477 82.6
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 5.1e-207 724.5 479 78.3
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 9.7e-206 720.3 478 78.2
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 2.0e-203 712.6 535 72.0
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.1e-201 706.8 480 75.6
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 4.2e-201 704.9 479 74.9
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 6.7e-199 697.6 478 76.8
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.3e-197 693.3 482 75.1
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.5e-195 686.4 484 73.3
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.0e-195 686.0 484 73.3
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.6e-195 685.6 478 74.7
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.6e-195 685.6 476 75.0
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 3.5e-195 685.3 484 73.1
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 7.7e-195 684.1 514 70.0
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.0e-194 683.7 482 74.7
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 2.9e-194 682.2 477 73.2
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 2.9e-194 682.2 478 75.1
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 6.5e-194 681.0 484 72.9
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 1.5e-193 679.9 476 73.5
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 1.5e-193 679.9 478 73.4
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 7.2e-193 677.6 478 73.2
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.2e-192 676.8 478 73.6
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 6.7e-191 671.0 477 73.0
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 8.8e-191 670.6 478 74.3
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 1.5e-190 669.8 479 73.1
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 5.7e-190 667.9 478 71.8
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 3.7e-189 665.2 478 72.0
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.8e-189 664.8 478 72.4
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.4e-188 662.5 478 72.4
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 7.0e-188 661.0 478 71.5
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 3.5e-187 658.7 477 70.9
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 4.5e-187 658.3 482 71.8
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 5.9e-187 657.9 477 71.1
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.9e-187 657.9 475 71.4
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 7.7e-187 657.5 473 72.5
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 1.0e-186 657.1 478 71.5
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 2.2e-186 656.0 506 67.2
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.9e-186 655.6 476 69.5
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 3.8e-186 655.2 476 69.7
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.8e-186 655.2 478 70.5
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 5.0e-186 654.8 480 71.2
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.1e-185 653.7 478 70.3
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 4.2e-185 651.7 480 71.7
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 5.5e-185 651.4 479 71.4
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.2e-184 650.2 475 69.1
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.6e-184 649.8 478 70.7
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.1e-184 649.4 478 70.7
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 2.1e-184 649.4 478 70.9
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 2.7e-184 649.0 477 70.2
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 2.7e-184 649.0 477 70.4
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 6.1e-184 647.9 477 72.7
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 1.0e-183 647.1 476 69.5
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 2.0e-182 642.9 477 70.2
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 7.5e-182 641.0 477 70.0
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 2.2e-181 639.4 494 68.2
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 3.7e-181 638.6 472 69.9
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 7.0e-180 634.4 478 69.0
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 7.0e-180 634.4 476 70.8
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 7.0e-180 634.4 477 68.3
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 2.0e-179 632.9 477 69.8
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 2.7e-179 632.5 477 68.1
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.5e-179 631.7 478 69.2
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 4.2e-177 625.2 476 67.2
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 3.6e-176 622.1 483 68.5
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.3e-175 619.4 475 67.6
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 5.2e-175 618.2 476 68.1
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 6.8e-175 617.8 481 66.9
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.3e-173 613.6 478 66.9
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.8e-173 612.5 479 66.4
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.1e-172 610.5 479 66.2
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.4e-172 610.1 478 69.0
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.6e-171 606.7 478 66.7
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.9e-169 599.7 468 68.8
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 4.3e-169 598.6 478 65.3
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 4.3e-169 598.6 478 65.3
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 4.3e-169 598.6 478 65.3
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 4.3e-169 598.6 478 65.9
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.2e-168 597.0 478 64.6
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 2.3e-167 592.8 477 67.7
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 2.3e-167 592.8 421 73.6
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 1.2e-166 590.5 478 64.6
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.2e-166 590.5 478 64.9
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 3.4e-166 589.0 479 64.9
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 3.0e-162 575.9 474 67.5
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 3.3e-161 572.4 408 72.5
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 5.6e-161 571.6 477 63.7
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 4.7e-160 568.5 423 69.7
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 4.0e-159 565.5 476 64.1
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 6.8e-159 564.7 440 69.3
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 4.9e-157 558.5 477 63.3
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 3.0e-154 549.3 476 62.0
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.2e-152 543.9 382 74.1
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 4.7e-152 542.0 494 59.9
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 5.2e-151 538.5 477 62.7
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.1e-148 530.8 383 70.5
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.4e-148 529.6 477 61.8
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 2.1e-144 516.5 578 51.2
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 2.1e-144 516.5 409 67.7
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 3.6e-144 515.8 371 73.0
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 4.0e-143 512.3 378 70.4
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 3.7e-141 505.8 478 59.2
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 6.4e-141 505.0 337 78.0
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 4.1e-140 502.3 809 41.9
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 3.1e-135 486.1 483 55.3
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.7e-133 480.3 478 56.1
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.7e-123 446.4 311 74.0
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 2.6e-118 429.9 371 60.9
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.9e-117 426.4 343 64.1
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 2.3e-114 416.8 316 69.6
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 2.1e-107 393.7 451 50.6
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.4e-103 380.9 451 49.2
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 2.6e-102 376.7 443 47.4
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 5.0e-101 372.5 449 47.9
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 9.3e-100 368.2 407 49.9
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.1e-99 367.1 451 48.6
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.8e-98 364.0 449 48.1
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 3.3e-97 359.8 473 45.7
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 3.3e-97 359.8 451 47.2
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 3.7e-96 356.3 451 46.6
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 8.2e-96 355.1 403 50.1
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 2.9e-93 346.7 450 46.2
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 9.4e-92 341.7 376 50.8
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 1.2e-91 341.3 376 51.3
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 4.3e-89 332.8 249 69.1
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.1e-84 318.2 490 40.4
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.6e-83 314.3 227 69.6
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.7e-80 304.3 238 67.2
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 7.0e-79 298.9 249 63.9
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 3.2e-76 290.0 448 42.4
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.2e-70 271.6 484 37.6
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 4.1e-55 219.9 320 45.6
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.4e-50 204.9 190 58.9
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 8.9e-50 202.2 215 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.8e-42 177.9 446 32.3
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 2.0e-41 174.5 203 46.8
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 8.1e-35 152.5 526 29.5
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 1.1e-34 152.1 102 72.5
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.8e-34 151.4 103 71.8
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 1.4e-15 88.6 143 35.7
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 7.1e-15 86.3 87 52.9
PRCOL_00005117 Prasinoderma coloniale HOM05D001663 ORTHO05D005717 7.3e-12 76.3 301 27.2
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 1.6e-11 75.1 60 66.7
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 1.4e-07 62.0 81 39.5
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 5.4e-07 60.1 141 36.2
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 9.3e-07 59.3 600 20.8


User provided reference genes

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