Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 2306.9 1168 100.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 2018.8 1171 88.0
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1964.5 1169 85.2
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1927.9 1169 83.4
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1908.6 1168 84.1
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1900.2 1169 83.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1880.5 1168 83.0
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1876.3 1170 83.2
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1854.7 1209 80.2
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1835.5 1170 80.1
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1833.2 1172 79.3
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1831.2 1173 80.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1826.6 1173 80.1
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1824.7 1172 79.4
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1824.3 1172 79.5
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1820.8 1157 80.3
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1818.9 1201 78.8
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1817.0 1173 79.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1815.0 1172 78.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1813.1 1173 79.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1807.7 1173 79.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1807.3 1172 79.1
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1807.0 1183 78.4
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1803.1 1174 78.7
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1802.3 1171 78.9
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1801.9 1182 78.3
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1801.9 1178 79.3
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1801.6 1172 79.4
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1800.8 1168 79.5
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1173 79.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1797.7 1171 78.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1793.5 1172 78.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1792.7 1175 78.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1791.5 1172 78.1
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1788.9 1172 78.2
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1787.3 1216 76.2
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1786.5 1188 77.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1785.8 1176 78.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1783.8 1220 75.8
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1782.7 1220 75.7
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1782.3 1173 78.1
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1780.0 1174 78.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1776.9 1220 75.7
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1774.6 1175 77.8
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1175 77.2
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1770.4 1199 77.0
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1768.8 1169 78.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1768.4 1210 76.0
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1767.3 1171 77.5
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1175 77.1
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1765.0 1172 77.2
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1762.7 1200 76.6
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1761.5 1210 75.8
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1758.8 1227 74.4
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1758.0 1174 76.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1758.0 1228 74.3
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1756.9 1172 76.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1748.4 1170 76.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1747.3 1173 76.8
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1743.8 1213 75.8
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1743.4 1178 76.5
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1743.4 1211 75.9
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1175 76.3
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1739.5 1171 76.4
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1174 76.5
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1735.7 1180 76.0
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1732.2 1177 76.8
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1729.1 1170 75.9
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1728.0 1171 75.8
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1724.5 1175 75.7
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1720.3 1173 75.5
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1707.6 1177 75.9
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1701.4 1173 75.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1174 74.4
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1697.9 1235 71.8
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1172 74.7
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1171 74.2
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1689.9 1175 74.4
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1179 74.6
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1172 74.5
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1203 73.7
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1684.8 1173 73.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1205 72.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1172 73.4
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1681.8 1172 74.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1679.1 1171 73.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1172 73.4
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1674.8 1170 73.8
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1674.1 1233 71.4
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1173 73.7
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1173 73.5
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1671.4 1177 73.5
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1671.4 1171 75.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1177 73.1
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1669.4 1234 71.3
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1174 73.4
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1666.0 1176 73.4
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1664.0 1176 73.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1662.1 1175 73.0
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1659.8 1166 74.5
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1659.4 1185 73.8
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1657.9 1173 72.6
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1656.3 1176 72.5
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1649.8 1185 73.6
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1648.3 1168 74.4
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1632.5 1184 71.6
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1631.3 1179 71.6
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1630.5 1172 72.1
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1623.6 1099 75.9
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1073 77.7
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1610.5 1182 70.9
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1595.9 1153 72.5
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1590.1 1182 70.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1588.2 1176 71.4
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1578.1 1181 69.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1558.5 1148 71.2
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1544.6 1171 68.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1543.1 1171 68.8
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1504.6 1111 71.8
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1504.2 948 81.3
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1411.4 948 76.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1410.6 1181 65.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1367.1 1169 64.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1347.8 1033 69.7
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1331.2 970 71.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1330.1 946 73.4
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1311.2 956 73.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1307.4 887 76.6
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1248.0 978 69.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1246.5 969 70.1
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1234.2 811 80.4
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1166.0 805 75.7
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1161.4 814 75.2
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1119.4 1165 58.1
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1105.5 806 71.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.6e-299 1033.1 723 74.3
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.4e-287 993.4 1174 48.5
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.1e-286 989.6 1201 47.3
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 9.4e-279 964.1 541 88.9
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.3e-255 885.9 721 66.2
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 4.6e-241 839.0 604 73.5
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.0e-187 661.8 431 76.6
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 3.3e-167 593.6 362 82.0
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.3e-144 517.7 307 82.1
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-140 504.6 897 40.4
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.7e-134 485.0 312 77.6
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.2e-134 484.6 306 78.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.7e-129 466.8 614 47.6
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.1e-121 441.4 285 79.3
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.9e-117 428.3 808 35.3
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 3.4e-103 380.9 1293 28.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 6.6e-99 366.7 228 78.1
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.7e-91 340.1 509 43.8
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.5e-87 328.9 197 82.2
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 4.3e-82 310.8 276 62.7
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.1e-81 308.5 206 74.8
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.8e-80 305.4 182 81.9
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 3.5e-76 291.2 187 73.8
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 8.5e-70 270.0 254 61.4
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.5e-66 259.2 145 89.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 6.3e-65 253.8 210 66.2
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.8e-59 235.7 186 65.6
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.2e-52 213.0 132 84.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.6e-47 196.1 139 72.7
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 5.9e-47 194.1 118 83.9
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.5e-45 188.7 155 65.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 3.6e-36 158.3 92 88.0
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 4.7e-28 131.3 87 78.2
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 6.1e-28 131.0 92 72.8
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 6.1e-28 131.0 92 72.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.9e-22 111.7 78 74.4
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.2e-18 100.1 83 65.1
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 9.8e-18 97.1 82 59.8
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.7e-17 96.3 81 54.3
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 3.7e-17 95.1 59 78.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 3.2e-16 92.0 46 84.8
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.1e-11 77.0 92 52.2


User provided reference genes

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