Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.1e-53 213.0 107 100.0
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.0e-30 136.7 86 81.4
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 3.0e-30 135.2 86 81.4
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.5e-29 132.9 87 79.3
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 3.3e-29 131.7 87 79.3
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 3.3e-29 131.7 86 80.2
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.8e-28 127.9 130 59.2
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 5.3e-27 124.4 87 74.7
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.5e-26 122.9 100 66.0
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 9.9e-26 120.2 85 72.9
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 1.1e-24 116.7 86 72.1
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.1e-24 116.7 85 70.6
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.4e-24 116.3 82 75.6
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.9e-24 115.9 86 70.9
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.9e-24 115.9 86 70.9
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.4e-24 115.5 72 79.2
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.2e-24 114.8 85 68.2
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.1e-24 114.0 85 67.1
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 2.1e-23 112.5 86 69.8
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 6.0e-23 110.9 85 68.2
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 1.8e-22 109.4 105 61.0
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 3.0e-22 108.6 101 62.4
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 1.1e-21 106.7 85 68.2
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 5.6e-21 104.4 114 54.4
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 7.4e-21 104.0 105 60.0
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 9.6e-21 103.6 85 64.7
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.3e-20 103.2 87 67.8
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 2.8e-20 102.1 97 61.9
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.8e-20 102.1 152 44.1
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 3.7e-20 101.7 89 62.9
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 8.1e-20 100.5 113 54.0
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.4e-19 99.8 102 55.9
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.4e-19 99.8 102 55.9
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.8e-19 99.4 125 47.2
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-19 99.4 113 50.4
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 3.1e-19 98.6 103 58.3
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 3.1e-19 98.6 117 50.4
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 4.0e-19 98.2 90 61.1
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.0e-19 98.2 85 61.2
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 5.3e-19 97.8 133 47.4
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 5.3e-19 97.8 87 60.9
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 5.3e-19 97.8 77 67.5
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 6.9e-19 97.4 90 63.3
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 9.0e-19 97.1 86 61.6
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.2e-18 96.7 86 64.0
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.2e-18 96.7 87 60.9
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.0e-18 95.9 83 62.7
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 5.8e-18 94.4 103 52.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 7.6e-18 94.0 128 45.3
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 7.6e-18 94.0 93 55.9
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.7e-17 92.8 100 53.0
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.9e-17 92.0 108 50.9
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.9e-16 89.4 94 52.1
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.9e-16 89.4 88 56.8
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-16 88.6 85 56.5
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 4.2e-16 88.2 72 65.3
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.6e-15 86.3 86 58.1
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 1.6e-15 86.3 103 55.3
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.6e-15 86.3 74 62.2
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.7e-15 85.5 173 37.0
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 4.6e-15 84.7 101 53.5
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 4.6e-15 84.7 104 49.0
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 4.6e-15 84.7 102 56.9
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 6.0e-15 84.3 85 55.3
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.9e-15 84.0 86 54.7
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.0e-14 83.6 89 53.9
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.0e-14 83.6 108 49.1
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.8e-14 82.8 87 56.3
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.8e-14 82.8 83 56.6
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.8e-14 82.8 86 57.0
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.0e-14 82.0 85 55.3
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.0e-14 82.0 85 55.3
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.7e-14 80.9 85 54.1
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 8.7e-14 80.5 83 56.6
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.1e-13 80.1 85 55.3
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 1.1e-13 80.1 86 54.7
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 1.5e-13 79.7 88 56.8
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.5e-13 79.7 85 54.1
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-13 79.7 81 55.6
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.9e-13 79.3 87 55.2
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 2.5e-13 79.0 134 40.3
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 2.5e-13 79.0 102 49.0
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 2.5e-13 79.0 100 48.0
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.3e-13 78.6 86 52.3
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.3e-13 78.2 87 50.6
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 5.6e-13 77.8 97 48.5
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 7.4e-13 77.4 86 51.2
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 9.6e-13 77.0 89 51.7
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.3e-12 76.6 82 54.9
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.3e-12 76.6 67 61.2
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 1.6e-12 76.3 85 51.8
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.6e-12 76.3 83 54.2
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.6e-12 76.3 86 53.5
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.1e-12 75.9 86 50.0
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.8e-12 75.5 87 52.9
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 3.7e-12 75.1 87 54.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 3.7e-12 75.1 86 53.5
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.7e-12 75.1 60 61.7
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 3.7e-12 75.1 86 53.5
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 6.2e-12 74.3 82 54.9
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 6.2e-12 74.3 87 50.6
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 1.4e-11 73.2 94 48.9
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.8e-11 72.8 143 37.8
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 2.4e-11 72.4 76 51.3
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 3.1e-11 72.0 40 85.0
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 3.1e-11 72.0 44 79.5
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 3.1e-11 72.0 40 85.0
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 4.0e-11 71.6 85 47.1
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 4.0e-11 71.6 40 85.0
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 5.3e-11 71.2 131 43.5
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 9.0e-11 70.5 61 65.6
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.2e-10 70.1 57 63.2
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 1.2e-10 70.1 40 85.0
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.5e-10 69.7 126 38.9
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.5e-10 69.7 88 45.5
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 2.0e-10 69.3 40 80.0
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 2.0e-10 69.3 40 80.0
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.6e-10 68.9 57 61.4
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.4e-10 68.6 57 61.4
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.4e-10 68.6 57 61.4
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 3.4e-10 68.6 40 80.0
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 4.5e-10 68.2 40 80.0
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 1.0e-09 67.0 40 80.0
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.3e-09 66.6 78 50.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 1.7e-09 66.2 116 40.5
Cre07.g329800 Chlamydomonas reinhardtii HOM05D003821 ORTHO05D004449 1.7e-09 66.2 61 54.1
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.7e-09 66.2 58 62.1
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 2.2e-09 65.9 84 47.6
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 2.9e-09 65.5 62 53.2
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 2.9e-09 65.5 85 47.1
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 4.9e-09 64.7 41 73.2
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 4.9e-09 64.7 33 90.9
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 4.9e-09 64.7 40 75.0
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 6.5e-09 64.3 92 48.9
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 8.4e-09 63.9 89 47.2
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 8.4e-09 63.9 116 37.1
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.4e-08 63.2 87 43.7
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 1.9e-08 62.8 75 49.3
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.9e-08 62.8 87 46.0
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.5e-08 62.4 46 76.1
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.5e-08 62.4 46 76.1
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 2.5e-08 62.4 47 68.1
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 2.5e-08 62.4 85 43.5
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.2e-08 62.0 46 76.1
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 3.2e-08 62.0 81 46.9
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 4.2e-08 61.6 125 37.6
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 4.2e-08 61.6 87 48.3
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 4.2e-08 61.6 40 67.5
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 5.5e-08 61.2 85 41.2
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.1e-08 60.8 40 72.5
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 9.3e-08 60.5 40 72.5
PSO210G2740 Papaver somniferum HOM05D003821 ORTHO05D004449 9.3e-08 60.5 62 50.0
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.2e-07 60.1 87 46.0
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.2e-07 60.1 85 45.9
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.1e-07 59.3 86 44.2
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 2.7e-07 58.9 43 69.8
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 6.0e-07 57.8 45 62.2
MBI02_g32313_MAGBIO Magnolia biondii HOM05D036700 ORTHO05D048553 6.0e-07 57.8 52 65.4
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 6.0e-07 57.8 86 44.2
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 1.0e-06 57.0 79 45.6
PRCOL_00003111 Prasinoderma coloniale HOM05D003821 ORTHO05D004449 1.3e-06 56.6 56 57.1
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.8e-06 56.2 72 45.8
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.8e-06 56.2 40 72.5
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.9e-06 55.1 88 40.9
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 5.1e-06 54.7 85 41.2
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 5.1e-06 54.7 72 44.4
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.1e-06 54.7 85 40.0
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.1e-06 54.7 87 41.4
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 6.7e-06 54.3 49 55.1
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 6.7e-06 54.3 34 76.5
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 6.7e-06 54.3 46 63.0
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 8.7e-06 53.9 86 41.9


User provided reference genes

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