Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 4.0e-53 211.1 100 100.0
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 1.8e-21 105.9 75 69.3
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 9.0e-21 103.6 81 63.0
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 2.9e-19 98.6 72 68.1
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 2.1e-17 92.4 72 63.9
Medtr2g048470 Medicago truncatula HOM05D006941 ORTHO05D008361 1.3e-16 89.7 71 63.4
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 1.6e-14 82.8 76 56.6
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 1.5e-12 76.3 144 36.1
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 4.5e-12 74.7 42 81.0
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 7.6e-12 73.9 42 78.6
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 1.7e-11 72.8 42 81.0
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.7e-11 72.8 42 81.0
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.7e-11 72.8 42 81.0
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.7e-11 72.8 42 81.0
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 1.7e-11 72.8 42 78.6
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 2.2e-11 72.4 42 76.2
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 2.2e-11 72.4 42 78.6
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 2.9e-11 72.0 42 76.2
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 1.1e-10 70.1 42 71.4
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.1e-10 70.1 42 73.8
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.1e-10 70.1 42 73.8
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 1.1e-10 70.1 42 73.8
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.4e-10 69.7 42 78.6
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 1.4e-10 69.7 42 76.2
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 1.9e-10 69.3 42 73.8
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.9e-10 69.3 42 76.2
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.9e-10 69.3 42 76.2
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 1.9e-10 69.3 42 73.8
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 1.9e-10 69.3 42 76.2
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 2.5e-10 68.9 44 70.5
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.2e-10 68.6 42 78.6
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 3.2e-10 68.6 44 70.5
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 4.2e-10 68.2 38 76.3
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 5.5e-10 67.8 38 76.3
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 5.5e-10 67.8 41 73.2
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 7.1e-10 67.4 41 73.2
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 7.1e-10 67.4 42 73.8
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 7.1e-10 67.4 36 80.6
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 9.3e-10 67.0 40 77.5
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 9.3e-10 67.0 41 73.2
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 9.3e-10 67.0 40 75.0
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 9.3e-10 67.0 38 76.3
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 9.3e-10 67.0 41 65.9
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 9.3e-10 67.0 36 77.8
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 1.2e-09 66.6 39 74.4
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 1.2e-09 66.6 42 73.8
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 1.2e-09 66.6 71 49.3
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 1.6e-09 66.2 42 73.8
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 1.6e-09 66.2 42 73.8
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 2.1e-09 65.9 42 71.4
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 2.1e-09 65.9 46 67.4
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 2.1e-09 65.9 42 69.0
Oeu048197.1 Olea europaea HOM05D010625 ORTHO05D008361 2.7e-09 65.5 41 73.2
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 3.5e-09 65.1 41 70.7
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 3.5e-09 65.1 42 66.7
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 4.6e-09 64.7 42 73.8
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 6.0e-09 64.3 33 81.8
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 6.0e-09 64.3 33 84.8
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 6.0e-09 64.3 43 69.8
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 7.9e-09 63.9 42 71.4
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 1.0e-08 63.5 42 69.0
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.0e-08 63.5 39 69.2
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 1.0e-08 63.5 42 66.7
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 1.0e-08 63.5 42 66.7
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 1.0e-08 63.5 42 69.0
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 1.0e-08 63.5 42 66.7
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.0e-08 63.5 42 66.7
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 1.3e-08 63.2 39 74.4
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 1.3e-08 63.2 39 74.4
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 1.3e-08 63.2 41 70.7
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 1.3e-08 63.2 42 69.0
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 1.8e-08 62.8 41 75.6
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 1.8e-08 62.8 34 76.5
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 1.8e-08 62.8 34 79.4
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 1.8e-08 62.8 41 70.7
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 1.8e-08 62.8 42 69.0
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 2.3e-08 62.4 41 70.7
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 3.0e-08 62.0 34 79.4
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 3.0e-08 62.0 42 69.0
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 3.0e-08 62.0 42 64.3
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 3.9e-08 61.6 38 73.7
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 3.9e-08 61.6 34 79.4
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 3.9e-08 61.6 34 79.4
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 3.9e-08 61.6 38 73.7
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 3.9e-08 61.6 37 67.6
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 5.1e-08 61.2 34 79.4
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 6.7e-08 60.8 39 66.7
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 6.7e-08 60.8 36 75.0
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 1.1e-07 60.1 38 76.3
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 1.1e-07 60.1 40 67.5
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 1.1e-07 60.1 34 76.5
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 1.1e-07 60.1 34 76.5
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 1.5e-07 59.7 30 86.7
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 1.5e-07 59.7 41 68.3
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 1.9e-07 59.3 42 66.7
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 1.9e-07 59.3 42 64.3
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 2.5e-07 58.9 42 59.5
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 2.5e-07 58.9 36 75.0
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 2.5e-07 58.9 36 75.0
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 2.5e-07 58.9 37 70.3
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 3.3e-07 58.5 37 67.6
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 3.3e-07 58.5 33 78.8
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 5.7e-07 57.8 37 67.6
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 2.1e-06 55.8 33 75.8
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 2.8e-06 55.5 34 70.6
Eucgr.H03674 Eucalyptus grandis HOM05D025724 ORTHO05D008361 4.8e-06 54.7 33 75.8


User provided reference genes

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