Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 3.0e-73 278.5 148 100.0
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 6.3e-63 244.2 148 86.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 2.4e-62 242.3 145 86.2
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.6e-61 239.6 148 84.5
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.6e-61 239.6 148 84.5
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.5e-59 233.0 144 85.4
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 4.2e-59 231.5 146 80.1
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.5e-59 231.1 142 82.4
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 9.4e-59 230.3 146 81.5
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.2e-58 229.9 141 83.0
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 2.1e-58 229.2 143 84.6
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 2.7e-58 228.8 148 78.4
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.7e-58 228.8 148 80.4
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.7e-58 228.8 147 79.6
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.6e-58 228.4 148 80.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.7e-58 228.0 141 82.3
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.7e-58 228.0 147 78.2
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 6.1e-58 227.6 148 79.7
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 8.0e-58 227.3 146 81.5
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 8.0e-58 227.3 141 81.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 8.0e-58 227.3 144 81.2
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.0e-57 226.9 139 87.1
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 79.7
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.0e-57 226.9 142 81.7
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.4e-57 226.5 146 81.5
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.4e-57 226.5 146 80.8
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.4e-57 226.5 142 81.0
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.4e-57 226.5 142 80.3
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.4e-57 226.5 135 87.4
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.8e-57 226.1 143 84.6
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.3e-57 225.7 147 78.9
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 3.0e-57 225.3 146 80.1
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 3.0e-57 225.3 146 80.1
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.0e-57 225.3 141 80.1
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.0e-57 225.3 144 79.2
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 3.0e-57 225.3 141 83.0
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 4.0e-57 224.9 142 81.7
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.0e-57 224.9 141 80.1
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 5.2e-57 224.6 144 79.9
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 5.2e-57 224.6 146 78.1
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 6.7e-57 224.2 142 78.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 6.7e-57 224.2 147 77.6
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 8.8e-57 223.8 144 77.8
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 141 80.1
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 141 80.1
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-56 223.4 146 79.5
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 80.7
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.2e-56 223.4 146 78.1
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.2e-56 223.4 143 79.7
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 78.2
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.5e-56 223.0 141 78.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.3e-56 221.9 145 80.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.3e-56 221.9 148 76.4
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.3e-56 221.9 143 77.6
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 4.4e-56 221.5 147 77.6
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 4.4e-56 221.5 148 76.4
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.4e-56 221.5 148 76.4
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 9.7e-56 220.3 141 80.1
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 147 77.6
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.3e-55 219.9 144 77.8
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.7e-55 219.5 148 77.0
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.7e-55 219.5 144 77.8
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.7e-55 219.5 144 77.8
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.7e-55 219.5 144 78.5
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.7e-55 219.5 139 78.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.7e-55 219.5 143 76.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 2.8e-55 218.8 149 77.2
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.8e-55 218.8 146 76.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.8e-55 218.8 142 81.0
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.8e-55 218.8 141 78.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.8e-55 218.8 140 78.6
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 141 78.7
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 4.8e-55 218.0 141 79.4
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 4.8e-55 218.0 143 76.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 6.3e-55 217.6 148 77.0
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 8.2e-55 217.2 142 80.3
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 8.2e-55 217.2 143 74.8
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.1e-54 216.9 144 77.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.4e-54 216.5 141 78.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.4e-54 216.5 141 78.0
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.8e-54 216.1 134 80.6
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.8e-54 216.1 144 77.8
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 141 77.3
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 2.4e-54 215.7 143 76.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 3.1e-54 215.3 147 75.5
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 4.1e-54 214.9 141 77.3
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.1e-54 214.9 141 77.3
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.1e-54 214.9 141 76.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.1e-54 214.9 138 79.0
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 5.3e-54 214.5 140 80.7
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.3e-54 214.5 148 75.0
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 9.1e-54 213.8 143 78.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.2e-53 213.4 143 77.6
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.2e-53 213.4 141 75.2
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.6e-53 213.0 143 77.6
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 7.7e-53 210.7 140 74.3
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.0e-52 210.3 140 74.3
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.2e-52 209.1 144 75.0
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.9e-52 208.8 143 76.2
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 3.8e-52 208.4 144 75.7
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 6.5e-52 207.6 147 71.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.1e-51 206.8 144 75.0
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.2e-51 205.3 134 77.6
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 5.5e-51 204.5 136 75.0
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.2e-50 203.4 147 70.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.1e-50 202.6 125 84.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.0e-48 196.1 143 72.7
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 3.4e-48 195.3 147 69.4
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 8.3e-47 190.7 143 69.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.4e-46 189.9 148 66.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-46 189.5 136 72.1
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.8e-46 189.5 136 72.1
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.8e-46 189.5 136 72.1
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.4e-46 189.1 136 72.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 3.1e-46 188.7 141 70.9
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 5.4e-46 188.0 134 72.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 9.1e-46 187.2 133 71.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 9.1e-46 187.2 141 70.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 9.1e-46 187.2 141 70.2
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.0e-45 186.0 142 69.0
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 2.7e-45 185.7 135 68.9
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.7e-45 185.7 143 68.5
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 7.7e-45 184.1 143 67.8
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 2.9e-44 182.2 144 69.4
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.9e-44 182.2 116 79.3
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 5.0e-44 181.4 144 69.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.5e-43 179.9 118 78.8
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 7.2e-43 177.6 137 64.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.1e-42 176.0 142 64.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 6.1e-42 174.5 143 66.4
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 8.0e-42 174.1 145 63.4
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.0e-41 173.7 143 66.4
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 7.5e-40 167.5 143 62.9
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.7e-39 165.2 143 62.2
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.0e-36 157.1 138 60.1
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 4.3e-35 151.8 139 60.4
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.0e-33 147.1 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.0e-32 142.9 107 63.6
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.4e-30 136.7 140 55.7
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.3e-25 119.4 109 61.5
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 2.2e-23 112.8 136 46.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.7e-23 112.1 88 68.2
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 9.2e-22 107.5 104 58.7
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 5.6e-19 98.2 141 39.7
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.6e-13 80.1 87 49.4
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.7e-12 76.6 46 80.4


User provided reference genes

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