Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.5e-243 845.9 459 100.0
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.8e-100 370.5 463 54.4
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 5.5e-89 332.4 472 50.2
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 4.8e-85 319.3 455 46.8
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.2e-67 261.5 506 38.7
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 3.3e-62 243.4 497 37.8
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.6e-51 208.0 460 40.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 5.5e-49 199.5 471 38.6
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 8.8e-47 192.2 489 36.4
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.2e-46 191.8 488 35.5
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.9e-42 177.2 506 33.8
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 2.7e-40 170.6 520 35.2
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.3e-39 167.5 506 34.6
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 6.8e-39 166.0 452 34.7
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 5.7e-38 162.9 455 33.6
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.7e-38 162.9 545 32.5
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 5.7e-38 162.9 448 37.5
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 7.5e-38 162.5 442 32.6
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 7.5e-38 162.5 544 34.9
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 1.7e-37 161.4 476 32.8
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.7e-37 161.4 447 32.7
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.2e-37 161.0 471 33.3
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 8.3e-37 159.1 424 35.8
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.1e-36 158.7 454 32.6
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.4e-36 158.3 487 32.6
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.8e-36 157.9 511 33.1
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.1e-36 157.1 486 33.1
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 4.1e-36 156.8 470 32.8
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.4e-36 156.4 557 32.0
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 7.0e-36 156.0 451 34.4
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 7.0e-36 156.0 441 32.9
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.7e-35 154.1 497 30.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 7.7e-35 152.5 209 48.3
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.0e-34 152.1 472 34.1
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.9e-34 150.6 459 32.2
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 2.9e-34 150.6 468 32.5
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 5.0e-34 149.8 482 31.5
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 3.3e-33 147.1 483 32.5
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 2.8e-32 144.1 453 31.6
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 8.0e-32 142.5 450 31.1
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 8.0e-32 142.5 447 32.2
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.4e-31 141.7 491 31.2
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.3e-31 141.0 595 31.8
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.0e-31 140.6 459 32.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 4.0e-31 140.2 445 31.7
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 4.0e-31 140.2 445 31.7
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 6.8e-31 139.4 444 32.0
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 8.9e-31 139.0 464 30.2
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-30 137.9 454 30.8
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 2.6e-30 137.5 448 32.4
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.6e-30 137.5 469 29.0
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.4e-30 137.1 450 30.2
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 4.4e-30 136.7 450 35.1
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 4.4e-30 136.7 447 31.5
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.7e-30 136.3 462 32.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 5.7e-30 136.3 459 30.9
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.2e-29 134.4 478 30.5
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 6.3e-29 132.9 450 31.3
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 8.3e-29 132.5 248 40.3
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.4e-28 131.7 464 30.0
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.4e-28 131.7 500 29.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-28 131.3 482 31.7
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.1e-28 130.6 518 29.0
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.1e-28 130.6 481 30.8
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 7.0e-28 129.4 458 29.5
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 9.2e-28 129.0 486 29.8
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 9.2e-28 129.0 486 29.8
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.2e-27 128.6 440 31.4
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.6e-27 128.3 509 29.9
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.7e-27 127.5 456 33.3
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 3.5e-27 127.1 480 28.5
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 3.5e-27 127.1 449 29.6
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 3.5e-27 127.1 449 31.6
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 4.5e-27 126.7 508 28.0
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 4.5e-27 126.7 454 30.0
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 5.9e-27 126.3 479 32.8
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 7.8e-27 125.9 474 30.2
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.0e-26 125.6 512 29.5
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.3e-26 125.2 461 31.9
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.3e-26 125.2 443 29.8
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.3e-26 125.2 454 28.6
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.7e-26 124.8 469 29.4
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 2.9e-26 124.0 480 29.4
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 2.9e-26 124.0 511 29.4
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.0e-26 123.2 512 28.3
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 6.6e-26 122.9 445 29.4
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 8.6e-26 122.5 472 28.6
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.5e-25 121.7 559 27.9
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.5e-25 121.7 478 29.1
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 4.3e-25 120.2 576 27.6
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.3e-25 120.2 542 29.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 4.3e-25 120.2 444 29.7
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 9.5e-25 119.0 471 28.7
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.2e-24 118.6 460 29.3
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.6e-24 118.2 444 29.3
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.1e-24 117.9 452 28.5
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.1e-24 117.9 452 28.5
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.7e-24 116.7 438 30.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.4e-23 115.2 444 29.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.8e-23 114.8 443 30.9
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.3e-23 114.4 455 28.1
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 5.2e-23 113.2 447 28.0
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 6.8e-23 112.8 193 40.4
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 8.9e-23 112.5 460 27.2
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 8.9e-23 112.5 556 27.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.0e-22 111.3 538 29.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.0e-22 111.3 306 33.0
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 3.4e-22 110.5 143 46.2
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 4.4e-22 110.2 461 28.4
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 5.8e-22 109.8 461 28.4
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 3.7e-21 107.1 441 29.5
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.1e-20 105.5 165 40.0
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.1e-20 105.5 569 26.2
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 4.1e-20 103.6 513 29.0
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.6e-19 101.7 131 41.2
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.6e-19 101.7 211 37.9
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-19 101.3 517 29.0
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.7e-19 100.9 140 42.9
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 4.6e-19 100.1 140 42.1
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 7.8e-19 99.4 569 26.0
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 1.0e-18 99.0 533 28.1
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.3e-18 98.6 459 26.1
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.3e-18 98.6 124 41.1
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 3.9e-18 97.1 473 29.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 8.6e-18 95.9 448 26.6
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.5e-17 95.1 599 25.2
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.5e-17 94.4 389 28.5
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.3e-17 94.0 448 27.7
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 5.6e-17 93.2 404 29.0
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 5.6e-17 93.2 104 44.2
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.1e-16 91.3 449 28.1
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.8e-15 88.2 450 28.7
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 5.2e-15 86.7 490 27.8
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 8.9e-15 85.9 95 51.6
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.5e-14 85.1 350 28.0
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.2e-12 77.4 126 38.1
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 3.2e-12 77.4 46 80.4
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 3.9e-10 70.5 119 35.3
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 8.6e-10 69.3 103 37.9
SGA_v2.0_scaffold51G18683 Striga asiatica HOM05D004833 ORTHO05D005671 1.5e-09 68.6 169 40.2
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 1.9e-09 68.2 118 35.6
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.9e-09 68.2 106 40.6
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 4.3e-09 67.0 49 63.3
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.8e-08 64.3 54 51.9
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 4.0e-07 60.5 111 34.2
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 5.2e-07 60.1 106 36.8
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.2e-07 60.1 123 35.0
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 5.8e-06 56.6 55 47.3


User provided reference genes

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