Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 3.2e-193 678.3 358 100.0
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 2.1e-149 532.7 357 80.1
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 5.8e-147 524.6 357 78.7
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 4.8e-141 505.0 371 74.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 5.5e-137 491.5 364 73.9
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.3e-130 470.3 341 73.0
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.9e-129 466.5 364 69.8
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 2.5e-129 466.1 357 69.2
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 9.4e-129 464.2 340 72.1
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 7.9e-128 461.1 375 68.0
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 7.9e-128 461.1 357 68.9
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 1.3e-125 453.8 343 69.7
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 5.9e-123 444.9 415 60.7
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 8.5e-122 441.0 354 68.6
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.8e-119 433.3 336 67.6
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 5.2e-119 431.8 361 66.2
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 8.2e-117 424.5 337 68.0
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.4e-116 423.7 336 66.7
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.8e-116 423.3 357 65.0
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 3.1e-116 422.5 336 66.4
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 5.3e-116 421.8 357 62.7
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 5.3e-116 421.8 336 67.0
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-114 416.0 336 66.1
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-114 415.6 336 65.5
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 5.0e-114 415.2 336 65.5
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.0e-114 415.2 335 65.7
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 6.5e-114 414.8 335 65.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.1e-113 414.1 336 64.9
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.5e-113 413.7 393 58.0
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 7.2e-113 411.4 335 66.6
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-112 410.6 336 66.1
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.2e-112 410.6 357 61.1
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 8.0e-112 407.9 360 60.8
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 8.0e-112 407.9 358 61.2
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 6.7e-111 404.8 375 60.3
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.5e-110 403.7 336 63.4
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.0e-110 403.3 356 63.2
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 2.6e-110 402.9 336 62.8
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 3.3e-110 402.5 336 63.4
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 5.7e-110 401.7 358 61.2
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 5.7e-110 401.7 336 63.4
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.2e-109 399.8 304 70.7
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.7e-109 399.1 359 61.3
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 3.7e-109 399.1 319 67.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.3e-108 395.2 304 70.7
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 5.3e-108 395.2 340 62.1
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 7.0e-108 394.8 340 63.5
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.2e-107 394.0 335 64.8
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.2e-107 394.0 356 61.0
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 7.7e-107 391.3 356 59.3
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 1.3e-106 390.6 357 60.8
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 6.5e-106 388.3 280 73.6
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.5e-106 387.9 360 60.3
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.1e-105 387.5 335 62.7
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.1e-105 387.5 373 57.6
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.1e-105 387.5 334 61.7
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.5e-105 387.1 346 61.3
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.6e-104 382.5 334 62.0
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 3.6e-104 382.5 467 49.5
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.4e-103 380.6 342 56.1
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 3.0e-103 379.4 334 61.4
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 3.0e-103 379.4 358 58.1
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 6.8e-103 378.3 334 61.1
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 6.8e-103 378.3 339 60.5
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.8e-102 374.4 336 61.0
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 6.3e-101 371.7 364 57.1
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.1e-100 370.9 295 66.8
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.0e-100 368.2 331 60.4
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 2.0e-99 366.7 355 54.6
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.5e-99 365.9 343 55.4
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.3e-98 364.0 347 55.9
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 5.0e-98 362.1 357 52.9
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.5e-97 360.5 335 58.5
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.5e-97 359.8 335 57.6
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.5e-97 358.6 444 48.6
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.1e-96 356.7 338 57.1
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 2.1e-96 356.7 338 57.7
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.8e-96 356.3 346 57.2
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 3.6e-96 355.9 313 62.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 4.7e-96 355.5 338 57.1
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 6.1e-96 355.1 338 57.4
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.0e-95 354.4 334 57.2
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.4e-95 354.0 336 58.6
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 4.0e-95 352.4 339 57.5
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 4.0e-95 352.4 319 64.9
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 5.2e-95 352.1 333 57.4
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 5.2e-95 352.1 339 57.5
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 6.8e-95 351.7 339 57.2
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.0e-94 350.1 339 57.2
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 2.6e-94 349.7 310 61.3
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 5.4e-92 342.0 337 54.9
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 5.0e-90 335.5 340 55.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 6.6e-90 335.1 372 51.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.1e-89 334.3 359 52.6
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 7.3e-89 331.6 241 76.8
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 2.1e-88 330.1 298 61.1
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 2.8e-88 329.7 298 60.4
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 8.0e-88 328.2 313 58.5
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 8.0e-88 328.2 293 59.7
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 8.0e-88 328.2 405 49.6
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-87 327.8 304 59.2
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.4e-87 327.4 271 63.5
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.8e-87 327.0 337 55.5
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-86 324.3 304 59.5
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.2e-86 324.3 345 51.9
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 3.4e-86 322.8 371 52.0
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 7.5e-86 321.6 339 54.3
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 7.5e-86 321.6 267 67.0
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 2.2e-85 320.1 340 55.0
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.0e-84 315.1 321 55.5
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.0e-83 313.5 302 57.9
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 3.9e-82 309.3 323 54.5
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 5.0e-82 308.9 549 40.1
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.1e-81 307.8 295 56.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.9e-81 307.0 226 69.9
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 8.0e-80 301.6 306 56.5
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.8e-79 298.5 320 52.5
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 6.4e-77 292.0 322 53.4
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.1e-75 287.0 343 46.9
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.9e-70 268.1 345 46.4
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.9e-69 265.8 345 46.1
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.5e-65 254.2 194 74.2
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 1.7e-61 240.7 334 45.8
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 2.1e-59 233.8 248 54.0
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.9e-57 227.3 158 72.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 4.7e-56 222.6 160 69.4
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 2.4e-52 210.3 128 81.2
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 3.6e-48 196.4 258 48.4
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.1e-47 194.9 159 66.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 1.8e-47 194.1 201 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 5.3e-47 192.6 322 38.8
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 3.4e-46 189.9 330 35.2
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 3.8e-45 186.4 363 34.2
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.3e-44 181.8 189 55.6
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 8.7e-42 175.3 172 56.4
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.5e-41 173.7 114 75.4
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 6.2e-40 169.1 298 37.2
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.4e-39 167.9 141 61.7
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 3.1e-39 166.8 115 70.4
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 2.7e-35 153.7 102 75.5
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 3.9e-34 149.8 234 42.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.2e-24 115.5 134 52.2
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-23 114.8 182 40.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.4e-23 114.0 253 37.2
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 4.1e-23 113.2 216 34.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 9.0e-23 112.1 105 57.1
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 5.0e-21 106.3 110 53.6
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 3.0e-18 97.1 365 27.9
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.0e-14 84.3 111 45.0
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.6e-14 84.0 86 52.3
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 3.0e-10 70.5 246 26.4
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 3.7e-08 63.5 58 58.6


User provided reference genes

Program Settings