Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.8e-246 855.5 440 100.0
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 6.9e-158 561.2 449 66.4
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 5.0e-156 555.1 416 70.4
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 1.9e-123 446.8 425 57.4
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 1.6e-117 427.2 503 49.9
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.2e-112 411.0 372 57.8
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 2.2e-95 353.6 435 47.1
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 2.4e-94 350.1 454 45.4
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 1.0e-92 344.7 442 45.9
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 1.1e-91 341.3 365 52.1
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 4.0e-89 332.8 376 49.5
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.6e-88 330.1 410 48.3
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 5.8e-88 328.9 411 47.4
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.9e-87 326.6 414 46.9
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 8.3e-87 325.1 454 44.7
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 5.4e-86 322.4 432 44.9
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 7.8e-85 318.5 410 47.8
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 3.0e-84 316.6 356 49.2
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 5.1e-84 315.8 401 46.4
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 6.6e-84 315.5 398 46.2
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 1.1e-83 314.7 418 45.7
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 1.1e-81 308.1 428 43.5
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 1.1e-81 308.1 428 43.5
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 1.1e-81 308.1 440 43.2
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 1.4e-81 307.8 358 50.3
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.4e-81 307.8 424 44.1
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 4.0e-81 306.2 410 45.1
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 1.5e-80 304.3 373 47.5
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 1.5e-80 304.3 450 44.2
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 2.0e-80 303.9 434 43.1
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 1.7e-79 300.8 355 48.5
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 3.8e-79 299.7 433 42.3
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 4.9e-79 299.3 364 46.2
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 4.9e-79 299.3 359 47.9
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 6.4e-79 298.9 433 42.3
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 7.1e-78 295.4 414 44.2
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 9.3e-78 295.0 357 47.9
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 2.1e-77 293.9 421 44.7
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 2.1e-77 293.9 383 45.2
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 4.6e-77 292.7 423 45.2
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 6.0e-77 292.4 433 42.0
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 6.0e-77 292.4 414 43.7
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.3e-76 291.2 355 47.6
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 1.7e-76 290.8 407 44.5
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.7e-76 290.8 393 44.5
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 3.0e-76 290.0 383 44.6
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 3.0e-76 290.0 398 44.7
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 3.0e-76 290.0 433 41.8
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.0e-76 290.0 394 44.2
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 5.1e-76 289.3 360 46.4
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 6.6e-76 288.9 386 44.0
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 6.6e-76 288.9 433 41.8
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 1.5e-75 287.7 378 45.0
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.9e-75 287.3 432 44.2
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 1.9e-75 287.3 389 44.7
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 3.3e-75 286.6 438 42.2
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 4.3e-75 286.2 324 48.8
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 4.3e-75 286.2 411 42.3
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 5.6e-75 285.8 410 44.1
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.3e-74 284.6 368 45.9
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 2.1e-74 283.9 381 44.4
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 6.2e-74 282.3 352 47.2
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 6.2e-74 282.3 371 45.6
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 1.1e-73 281.6 401 41.9
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.4e-73 281.2 425 42.4
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 1.8e-73 280.8 344 45.6
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 1.8e-73 280.8 341 45.7
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 2.4e-73 280.4 367 44.7
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 5.3e-73 279.3 414 41.3
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 9.0e-73 278.5 359 45.7
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 1.2e-72 278.1 426 40.6
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 3.4e-72 276.6 415 41.0
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 4.4e-72 276.2 352 46.3
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 7.6e-72 275.4 352 46.3
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 1.7e-71 274.2 424 41.5
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 6.4e-71 272.3 400 42.5
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 3.2e-70 270.0 396 42.9
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 1.2e-69 268.1 382 44.0
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 3.9e-68 263.1 220 58.6
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 5.1e-68 262.7 430 39.1
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 3.1e-65 253.4 355 43.4
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 2.0e-64 250.8 439 38.0
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 7.6e-64 248.8 270 49.3
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 2.9e-63 246.9 361 43.2
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 3.3e-59 233.4 367 40.1
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 7.4e-59 232.3 400 38.8
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 2.1e-53 214.2 365 38.4
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 2.1e-53 214.2 199 55.8
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 7.9e-53 212.2 366 38.0
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 7.9e-53 212.2 425 37.9
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 7.9e-53 212.2 425 37.9
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.0e-52 211.8 157 66.2
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.9e-52 209.9 157 65.0
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 6.7e-52 209.1 415 35.2
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 1.5e-51 208.0 491 34.2
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 1.7e-47 194.5 353 38.0
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 5.1e-44 183.0 358 36.6
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 1.8e-41 174.5 292 36.6
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 6.9e-41 172.6 275 39.6
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.2e-39 167.5 133 63.9
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 6.5e-39 166.0 363 35.3
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 5.9e-32 142.9 361 32.4
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 7.7e-32 142.5 215 39.1
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.1e-30 138.7 221 39.8
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.3e-23 115.2 80 71.2
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 5.5e-22 109.8 296 30.1
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 3.0e-20 104.0 220 35.0
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 1.1e-19 102.1 297 29.6
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 2.0e-19 101.3 284 29.2
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 2.6e-19 100.9 76 60.5
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.8e-18 97.4 225 34.7
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 3.1e-17 94.0 72 56.9
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 4.2e-14 83.6 80 48.8
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 5.5e-14 83.2 83 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.4e-11 73.6 72 58.3
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 7.5e-11 72.8 48 70.8
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 9.8e-11 72.4 282 25.9
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.3e-10 72.0 45 73.3
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 7.0e-09 66.2 90 41.1
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 7.2e-06 56.2 171 27.5


User provided reference genes

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