Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 2.2e-73 278.9 139 100.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 5.6e-29 131.3 70 92.9
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 2.8e-28 129.0 70 90.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.6e-28 128.6 70 90.0
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 3.6e-28 128.6 83 79.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.2e-28 127.9 70 90.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.1e-28 127.5 70 88.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 8.9e-27 124.0 69 87.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.5e-26 123.2 70 85.7
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-26 121.7 70 85.7
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-26 121.7 70 85.7
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 5.8e-26 121.3 70 85.7
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 7.6e-26 120.9 70 84.3
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 9.9e-26 120.6 70 84.3
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 9.9e-26 120.6 70 84.3
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.7e-25 119.8 69 85.5
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 2.2e-25 119.4 69 84.1
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.6e-23 113.2 85 69.4
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.5e-23 112.1 70 78.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.0e-23 111.3 69 79.7
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 6.0e-23 111.3 70 81.4
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.8e-23 110.9 70 81.4
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.0e-22 110.5 70 75.7
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.7e-22 109.8 70 78.6
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.7e-22 109.8 70 78.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 3.0e-22 109.0 70 80.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.9e-22 108.6 70 80.0
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 3.9e-22 108.6 70 77.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 3.9e-22 108.6 70 75.7
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.9e-22 108.6 70 78.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.6e-22 107.8 69 78.3
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 8.6e-22 107.5 70 80.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 8.6e-22 107.5 70 78.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.9e-21 106.3 69 78.3
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.9e-21 106.3 70 77.1
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 77.1
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 77.1
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 78.6
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 78.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 78.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 77.1
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.5e-21 105.9 70 77.1
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 4.3e-21 105.1 65 76.9
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 5.6e-21 104.8 70 75.7
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 7.3e-21 104.4 70 77.1
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 7.3e-21 104.4 70 74.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 9.6e-21 104.0 70 77.1
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 9.6e-21 104.0 70 75.7
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 9.6e-21 104.0 70 74.3
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 9.6e-21 104.0 70 74.3
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.2e-20 103.6 70 75.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.2e-20 103.6 70 74.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.2e-20 103.6 70 74.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.2e-20 103.6 70 75.7
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.2e-20 103.6 68 75.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.1e-20 102.8 70 74.3
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.1e-20 102.8 70 74.3
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.1e-20 102.8 70 74.3
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.1e-20 102.8 70 74.3
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.1e-20 102.8 70 74.3
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.1e-20 102.8 70 75.7
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-20 102.1 70 77.1
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 3.6e-20 102.1 70 74.3
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 3.6e-20 102.1 70 75.7
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.7e-20 101.7 70 75.7
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 4.7e-20 101.7 70 74.3
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 8.1e-20 100.9 70 72.9
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.1e-19 100.5 70 72.9
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.1e-19 100.5 70 74.3
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-19 100.5 69 75.4
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.4e-19 100.1 69 75.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-19 99.8 70 75.7
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.4e-19 99.4 67 71.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.4e-19 99.4 70 70.0
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 4.0e-19 98.6 67 73.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 4.0e-19 98.6 64 73.4
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-19 98.2 70 75.7
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.2e-19 98.2 70 75.7
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.9e-19 97.4 68 73.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-18 97.1 56 85.7
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.2e-18 97.1 70 71.4
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.2e-18 97.1 98 55.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.5e-18 96.7 70 68.6
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 2.0e-18 96.3 70 68.6
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.0e-18 96.3 67 73.1
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.0e-18 96.3 67 73.1
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.0e-18 96.3 67 73.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.4e-18 95.5 67 71.6
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 4.4e-18 95.1 65 72.3
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.8e-18 94.7 70 68.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 5.8e-18 94.7 76 69.7
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 5.8e-18 94.7 70 67.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 7.6e-18 94.4 70 68.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 7.6e-18 94.4 70 68.6
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 7.6e-18 94.4 70 68.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 7.6e-18 94.4 70 68.6
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 9.9e-18 94.0 70 68.6
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 9.9e-18 94.0 70 68.6
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 9.9e-18 94.0 70 68.6
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.3e-17 93.6 67 71.6
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-17 93.2 70 67.1
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.7e-17 93.2 68 64.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.2e-17 92.8 70 65.7
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-17 92.4 69 72.5
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-17 92.4 69 68.1
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-17 92.4 69 68.1
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 2.9e-17 92.4 69 68.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.9e-17 92.4 69 68.1
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.9e-17 92.4 67 67.2
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.8e-17 92.0 69 68.1
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 4.9e-17 91.7 70 67.1
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.9e-17 91.7 70 67.1
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 4.9e-17 91.7 70 65.7
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 6.4e-17 91.3 67 67.2
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 6.4e-17 91.3 68 69.1
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 6.4e-17 91.3 69 66.7
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 6.4e-17 91.3 69 66.7
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 6.4e-17 91.3 69 66.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 8.4e-17 90.9 70 65.7
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.2e-16 89.0 69 66.7
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.2e-16 89.0 70 64.3
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 5.4e-16 88.2 70 60.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-14 82.4 90 55.6
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.1e-14 81.6 74 63.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 5.1e-14 81.6 63 68.3
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 4.3e-13 78.6 55 72.7
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.3e-12 77.0 55 70.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-12 76.3 85 56.5
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.8e-12 75.9 55 67.3
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 4.8e-12 75.1 55 67.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 8.1e-12 74.3 70 57.1
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.1e-12 74.3 67 61.2
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.0e-11 72.0 70 54.3
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 5.3e-11 71.6 55 67.3
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.2e-10 70.5 67 55.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.4e-10 68.9 57 61.4
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.3e-09 67.0 71 49.3
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 6.4e-09 64.7 53 60.4
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.2e-08 62.4 70 51.4
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.2e-08 62.0 81 50.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 7.1e-08 61.2 73 50.7
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 1.6e-07 60.1 31 87.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 2.1e-07 59.7 46 65.2
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.1e-07 59.7 59 50.8
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.1e-06 55.1 38 73.7


User provided reference genes

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