Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.6e-94 349.4 175 100.0
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.9e-67 258.8 150 84.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 6.5e-67 257.7 150 83.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.2e-66 255.4 150 81.3
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 3.0e-64 248.8 161 76.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.4e-63 244.2 143 81.8
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.4e-61 240.0 150 76.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.9e-59 232.3 148 75.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.5e-58 229.9 150 74.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.7e-57 225.7 149 71.8
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 8.8e-56 220.7 150 70.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 3.4e-55 218.8 150 69.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 3.4e-55 218.8 150 68.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 5.7e-55 218.0 150 71.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 7.5e-55 217.6 150 68.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-54 216.9 150 67.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.3e-54 216.9 150 67.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.7e-54 216.5 150 70.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.7e-54 216.5 155 67.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.7e-54 216.5 150 70.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.7e-54 216.5 150 68.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.8e-54 215.7 150 68.7
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.8e-54 215.7 150 69.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.3e-54 214.5 150 68.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 6.3e-54 214.5 150 68.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 6.3e-54 214.5 150 67.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 8.3e-54 214.2 150 68.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 8.3e-54 214.2 150 68.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-53 213.8 150 67.3
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 2.4e-53 212.6 147 68.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 3.1e-53 212.2 149 67.1
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 9.1e-53 210.7 150 66.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 9.1e-53 210.7 147 66.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.7e-52 209.1 151 64.9
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.5e-52 208.8 150 68.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.5e-52 208.8 148 66.2
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 4.5e-52 208.4 150 68.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 4.5e-52 208.4 147 68.7
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.5e-52 208.4 150 66.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 5.9e-52 208.0 149 67.1
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.7e-52 207.6 147 65.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.7e-52 207.6 147 65.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 7.7e-52 207.6 147 65.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.0e-51 207.2 150 66.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.0e-51 207.2 150 67.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.0e-51 207.2 150 66.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.3e-51 206.8 150 64.7
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.7e-51 206.5 150 66.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.7e-51 206.5 147 65.3
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.8e-51 205.3 222 50.5
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.8e-51 205.3 148 66.2
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.0e-51 204.9 150 64.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.5e-51 204.5 149 65.1
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 6.5e-51 204.5 150 68.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 8.5e-51 204.1 147 66.7
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.9e-50 203.0 147 66.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.9e-50 203.0 147 65.3
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 2.5e-50 202.6 147 65.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.2e-50 202.2 146 65.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.2e-50 202.2 150 64.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 4.2e-50 201.8 147 63.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 5.5e-50 201.4 150 62.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.5e-50 201.4 150 63.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-50 201.4 150 63.3
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-50 201.4 150 62.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.2e-50 201.1 150 63.3
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.2e-50 201.1 170 62.9
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 7.2e-50 201.1 150 64.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.6e-49 199.9 150 63.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.1e-49 199.5 150 63.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-49 199.5 150 62.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-49 199.5 150 63.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 2.1e-49 199.5 150 63.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-49 199.1 150 63.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.7e-49 199.1 150 62.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-49 199.1 147 64.6
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.6e-49 198.7 143 67.1
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.1e-49 198.0 150 62.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 8.0e-49 197.6 150 60.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 8.0e-49 197.6 146 62.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 8.0e-49 197.6 149 64.4
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.0e-48 197.2 150 62.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.3e-48 196.1 150 60.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 5.2e-48 194.9 149 62.4
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 6.8e-48 194.5 146 62.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.2e-47 193.7 147 63.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.5e-47 193.4 143 64.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-47 193.4 143 64.3
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-47 193.4 143 64.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-47 193.4 143 64.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.0e-47 193.0 147 60.5
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-47 193.0 145 63.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-47 193.0 145 63.4
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.6e-47 192.6 157 59.2
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.4e-47 191.8 143 63.6
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 7.5e-47 191.0 149 62.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 9.8e-47 190.7 147 60.5
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-46 190.3 162 58.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-46 190.3 147 60.5
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.3e-46 190.3 147 61.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.3e-46 190.3 149 62.4
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 2.8e-46 189.1 149 60.4
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.7e-46 188.7 140 60.7
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.7e-46 188.7 150 60.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 4.9e-46 188.3 160 56.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.9e-46 188.3 165 57.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 8.3e-46 187.6 149 61.1
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.1e-45 187.2 149 59.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.1e-45 187.2 149 59.7
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.8e-45 186.4 178 52.2
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.8e-45 186.4 149 59.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 2.4e-45 186.0 149 60.4
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-45 185.3 161 56.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.2e-44 183.7 135 65.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.2e-44 183.7 149 59.1
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.7e-44 182.6 147 62.6
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.3e-43 180.3 149 59.7
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.3e-43 179.5 139 60.4
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 6.6e-43 177.9 181 49.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-42 177.2 143 60.8
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.9e-42 176.4 139 57.6
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 7.2e-42 174.5 193 49.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 7.2e-42 174.5 147 57.1
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.2e-41 173.7 150 58.0
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-41 173.3 150 58.0
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.8e-41 172.6 150 56.7
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.7e-41 171.8 150 56.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.5e-39 166.8 150 54.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.5e-39 166.8 150 54.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-39 166.0 143 56.6
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-39 166.0 143 56.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 2.6e-39 166.0 143 56.6
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 7.5e-39 164.5 143 55.9
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.7e-38 163.3 150 54.0
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.9e-38 161.8 149 54.4
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 3.2e-37 159.1 142 54.9
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 7.8e-36 154.5 149 53.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.0e-35 154.1 108 65.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.0e-35 154.1 108 65.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.1e-34 150.6 128 59.4
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.1e-34 150.6 128 59.4
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.1e-33 146.4 89 75.3
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.6e-33 145.6 160 50.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.7e-33 145.2 89 77.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-32 144.1 151 51.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.3e-32 142.9 133 55.6
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 8.9e-32 141.0 89 71.9
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.8e-31 138.3 108 57.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.8e-31 138.3 89 73.0
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-30 137.1 107 57.9
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 8.3e-30 134.4 89 69.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.0e-27 127.5 106 58.5
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.3e-27 127.1 151 45.7
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.8e-24 116.7 149 40.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-24 116.3 149 46.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 8.9e-24 114.4 84 58.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.7e-22 110.2 82 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 4.9e-22 108.6 138 34.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.1e-21 107.5 139 38.8
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.0e-19 99.4 86 51.2
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.1e-19 98.6 103 47.6
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.3e-18 95.5 143 31.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-15 87.4 154 29.9
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.4e-15 85.9 149 34.2
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 8.4e-14 81.3 71 57.7
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.1e-13 79.0 109 32.1
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 2.7e-12 76.3 91 45.1
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.6e-12 75.5 52 65.4
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 3.0e-11 72.8 133 27.1
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 4.3e-10 68.9 101 36.6
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.2e-09 67.4 81 48.1
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.7e-09 65.5 44 61.4
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.4e-08 63.9 138 25.4
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.6e-07 59.7 46 58.7


User provided reference genes

Program Settings