Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 0.0e+00 1273.8 647 100.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 0.0e+00 1092.0 647 85.5
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.9e-298 1028.1 640 82.2
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.5e-297 1025.0 640 81.9
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.0e-294 1015.4 634 82.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.4e-279 966.1 627 79.1
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.4e-276 955.3 621 80.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.4e-276 954.1 631 76.9
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.0e-276 953.7 635 77.2
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.0e-275 952.2 631 76.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.5e-275 951.4 639 76.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 6.0e-275 950.7 631 76.7
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.3e-274 948.7 628 78.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 8.6e-274 946.8 606 80.7
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 6.2e-272 940.6 582 81.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 9.9e-270 933.3 632 75.8
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.3e-269 932.9 606 79.2
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.7e-269 932.6 620 78.2
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.7e-269 932.6 594 80.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 6.4e-269 930.6 615 77.9
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.1e-268 927.2 575 81.6
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.2e-267 926.4 625 76.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.7e-267 925.2 639 75.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.5e-267 924.9 583 80.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.5e-267 924.9 626 76.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.6e-267 924.5 620 77.6
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.0e-266 923.3 576 81.8
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.0e-266 921.8 606 78.4
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 3.0e-266 921.8 584 80.8
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.6e-264 916.0 575 80.2
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.6e-264 916.0 636 75.8
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 4.7e-264 914.4 614 76.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 4.7e-264 914.4 645 76.6
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.1e-263 913.3 573 81.3
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.2e-262 909.8 571 80.7
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-262 909.8 634 76.0
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.6e-262 908.7 570 81.1
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.4e-262 907.9 584 78.9
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.8e-262 907.5 615 77.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 9.9e-262 906.7 614 76.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.7e-261 906.0 611 77.9
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 2.2e-261 905.6 584 78.8
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.9e-261 905.2 631 74.5
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 4.9e-261 904.4 622 75.4
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.4e-261 903.7 622 75.7
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.1e-260 903.3 623 76.2
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.1e-260 901.4 622 75.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 4.1e-260 901.4 622 75.6
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 4.1e-260 901.4 615 75.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-259 899.8 584 78.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 3.5e-259 898.3 584 77.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.0e-258 896.7 608 77.1
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.7e-258 896.0 618 75.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.7e-258 896.0 630 74.1
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.1e-258 894.4 591 78.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 6.6e-258 894.0 623 75.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 4.3e-257 891.3 576 78.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 5.6e-257 891.0 623 75.4
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 7.3e-257 890.6 599 76.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.2e-256 889.8 619 74.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.6e-256 889.4 626 74.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.1e-256 889.0 599 76.5
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.1e-256 889.0 620 74.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.8e-256 888.6 609 76.5
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 4.7e-256 887.9 574 79.3
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 4.7e-256 887.9 590 77.8
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.1e-255 886.7 599 76.3
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.1e-255 885.2 618 74.8
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.2e-254 883.2 577 77.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.6e-254 882.1 608 75.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 3.4e-254 881.7 607 75.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 4.4e-254 881.3 600 76.3
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.7e-253 879.4 569 79.1
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 3.2e-252 875.2 575 77.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 7.8e-251 870.5 580 76.6
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.1e-249 866.7 630 72.1
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 3.3e-249 865.1 606 74.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.8e-248 862.1 609 73.4
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-247 860.1 587 77.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 8.4e-245 850.5 571 77.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 9.3e-244 847.0 568 75.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.1e-242 841.3 598 72.9
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.5e-241 839.7 577 75.0
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.3e-241 838.6 591 73.3
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 4.3e-241 838.2 620 71.0
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.3e-240 836.6 518 80.3
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.0e-239 831.6 568 74.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 4.0e-239 831.6 585 72.3
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.0e-238 829.3 677 65.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.1e-236 823.5 578 73.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.1e-236 820.8 613 70.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-235 820.1 600 71.3
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.9e-234 815.1 583 72.6
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.9e-234 815.1 576 73.3
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 5.1e-234 814.7 600 70.8
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.7e-234 813.9 626 68.8
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.9e-233 812.8 582 72.7
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.3e-233 811.6 598 70.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.3e-233 811.6 598 70.6
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 7.4e-233 810.8 600 70.5
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 9.6e-233 810.4 582 72.7
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 9.6e-233 810.4 583 71.9
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.6e-232 809.7 620 68.7
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.8e-232 808.1 601 70.0
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 6.2e-232 807.7 582 71.5
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 8.2e-232 807.4 582 72.7
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.8e-230 801.2 580 70.9
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-229 799.7 583 71.2
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-229 799.7 581 71.4
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.2e-229 799.3 593 70.2
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.9e-228 796.2 576 71.7
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 7.1e-228 794.3 578 72.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-226 790.4 574 72.0
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-226 790.4 574 72.0
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.9e-226 788.5 555 72.6
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.9e-226 788.5 555 72.6
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.3e-225 785.0 616 67.2
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.9e-220 769.6 639 67.0
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.5e-220 768.1 568 72.5
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.0e-218 762.3 573 69.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.5e-217 759.2 537 71.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 5.9e-214 748.0 466 80.7
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 7.7e-214 747.7 536 71.3
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.1e-212 743.8 415 87.5
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.7e-211 739.2 634 62.3
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.6e-211 738.8 519 71.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.1e-211 738.0 581 68.0
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.1e-210 734.9 413 87.7
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.4e-209 731.1 518 71.6
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.7e-208 729.9 523 69.8
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.2e-208 729.6 420 86.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.8e-208 728.4 617 65.6
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 8.5e-205 717.6 602 63.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.7e-203 711.8 574 65.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-199 699.5 526 68.3
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.9e-198 694.9 628 60.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.3e-197 693.7 584 63.5
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.5e-197 691.4 526 67.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-195 687.2 414 82.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-195 686.8 526 66.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-186 657.1 526 64.8
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.0e-186 656.0 495 68.1
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.2e-185 654.1 512 66.0
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.5e-182 642.5 527 63.0
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.3e-178 629.8 498 70.1
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.8e-162 577.0 575 52.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.1e-158 563.5 383 73.9
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 9.5e-156 554.7 479 59.3
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.6e-153 546.6 524 58.0
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.2e-139 498.8 352 75.6
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-136 491.1 456 58.6
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.3e-135 485.0 324 77.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.2e-107 394.0 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.8e-77 292.4 157 92.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 5.0e-64 250.0 145 86.9
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.3e-48 198.0 193 54.4
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.6e-46 190.7 193 52.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 2.3e-45 188.0 159 61.6
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.5e-44 185.3 159 61.0
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.4e-42 178.7 131 68.7
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.8e-37 161.8 98 80.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 4.6e-25 120.6 88 67.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 7.8e-25 119.8 115 58.3
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-22 111.7 314 28.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.6e-22 110.9 88 62.5
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.8e-22 110.5 218 33.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.8e-20 103.6 60 86.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.2e-19 101.7 123 41.5
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.4e-18 97.1 217 33.6
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-17 94.7 187 32.1
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.0e-16 91.3 86 54.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-15 89.4 104 53.8
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 7.3e-15 86.7 70 71.4
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 3.5e-09 67.8 55 54.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.0e-08 66.2 65 56.9


User provided reference genes

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