Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 5.8e-294 1013.4 499 100.0
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.9e-236 822.4 499 82.2
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.2e-216 755.7 500 75.6
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 5.7e-201 704.5 495 71.7
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 4.9e-184 648.3 501 65.7
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.9e-184 648.3 500 65.2
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 2.4e-183 646.0 493 65.5
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.2e-183 645.6 498 65.3
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 9.2e-183 644.0 496 65.3
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 6.6e-181 637.9 496 65.1
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 6.8e-178 627.9 493 63.3
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.0e-177 626.3 438 67.8
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 7.6e-177 624.4 496 62.5
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 6.4e-176 621.3 494 63.2
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 7.1e-175 617.8 483 64.8
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.6e-174 616.7 525 61.9
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 2.7e-174 615.9 486 63.4
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.7e-173 613.2 493 62.5
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.0e-173 612.5 468 64.3
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 3.0e-173 612.5 500 62.4
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 3.0e-173 612.5 487 62.8
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.1e-172 610.5 457 67.6
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.5e-172 609.4 498 62.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 4.3e-172 608.6 489 63.4
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.0e-169 599.7 467 64.0
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 2.6e-169 599.4 496 60.1
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 3.8e-168 595.5 496 60.9
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 6.4e-168 594.7 499 61.9
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.1e-167 594.0 479 61.4
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.4e-167 593.6 499 60.5
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.4e-167 593.6 496 59.3
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.4e-167 593.6 498 61.8
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.9e-167 593.2 488 61.5
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.2e-167 592.4 434 65.9
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 4.2e-167 592.0 427 67.4
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 7.1e-167 591.3 467 62.3
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.2e-166 590.5 495 60.4
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 2.7e-166 589.3 499 60.7
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 3.5e-166 589.0 457 63.0
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.5e-166 589.0 500 60.4
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 3.5e-166 589.0 489 61.1
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 7.8e-166 587.8 499 59.7
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.3e-165 587.0 461 61.2
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.7e-165 586.6 379 72.0
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.7e-165 586.6 461 62.3
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 3.0e-165 585.9 476 59.7
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 6.6e-165 584.7 459 61.9
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 8.7e-165 584.3 499 58.5
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.5e-164 583.6 500 59.8
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 2.5e-164 582.8 495 58.2
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 3.3e-164 582.4 499 57.9
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 7.3e-164 581.3 518 57.9
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 7.3e-164 581.3 500 58.8
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 1.3e-163 580.5 498 59.2
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 3.6e-163 578.9 461 61.2
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 6.2e-163 578.2 459 61.2
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 8.1e-163 577.8 506 58.9
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.8e-162 576.6 459 61.0
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.1e-162 575.9 402 69.2
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 3.1e-162 575.9 504 58.5
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 4.0e-162 575.5 459 60.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 4.0e-162 575.5 459 61.0
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.2e-161 573.9 478 59.0
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.2e-161 573.9 504 59.1
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.2e-161 573.9 426 63.8
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 2.0e-161 573.2 484 60.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 4.4e-161 572.0 419 64.7
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.7e-160 570.1 475 59.4
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 3.8e-160 568.9 534 56.0
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.4e-159 567.0 378 69.0
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.4e-159 566.2 521 57.2
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.2e-158 563.9 499 56.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.5e-158 562.4 450 64.4
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.1e-157 558.5 462 59.1
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 5.6e-156 555.1 475 58.1
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.2e-153 547.4 473 58.1
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.4e-153 545.8 403 65.0
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 5.4e-151 538.5 405 64.2
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.7e-150 536.2 479 57.0
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.5e-150 535.8 524 54.8
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 4.3e-148 528.9 405 64.2
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 9.6e-148 527.7 448 57.1
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.3e-147 527.3 393 63.9
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.8e-146 523.5 475 56.4
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.1e-143 514.2 349 71.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.9e-143 513.5 407 59.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 3.3e-140 502.7 306 76.1
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 4.1e-138 495.7 423 57.9
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.2e-136 490.0 547 50.8
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 2.2e-136 490.0 479 53.7
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.8e-136 489.2 524 52.1
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 5.0e-136 488.8 364 65.9
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.6e-129 466.5 395 58.5
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 9.4e-127 458.0 413 55.0
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 5.7e-124 448.7 361 57.9
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.2e-119 432.6 330 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 3.6e-118 429.5 440 49.3
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.9e-117 426.0 398 55.3
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.1e-116 424.5 377 57.6
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.0e-116 423.7 331 62.8
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.0e-104 384.8 268 69.4
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.5e-89 332.8 358 47.8
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.5e-87 327.8 179 82.1
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.9e-87 327.4 252 64.7
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 2.5e-87 327.0 252 64.7
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 2.3e-85 320.5 336 45.5
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.5e-84 317.8 332 50.3
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 2.4e-82 310.5 284 53.2
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 4.1e-82 309.7 247 61.5
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 4.1e-82 309.7 247 61.5
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 3.9e-80 303.1 216 66.2
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 2.5e-79 300.4 216 65.7
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 4.0e-69 266.5 416 36.1
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 2.3e-64 250.8 338 41.7
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 3.2e-58 230.3 227 52.9
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 5.4e-58 229.6 234 51.7
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 6.6e-56 222.6 192 62.5
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 3.2e-50 203.8 134 68.7
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 3.0e-48 197.2 190 54.2
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 2.4e-42 177.6 106 75.5
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.9e-39 167.9 330 34.2
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.3e-37 159.8 98 69.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.1e-30 137.9 74 79.7
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.1e-30 136.0 331 30.2
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.0e-28 131.3 73 80.8
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.0e-19 102.4 55 78.2
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.2e-17 95.5 365 24.7
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 2.2e-14 84.7 131 37.4
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 4.4e-07 60.5 37 64.9


User provided reference genes

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