Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24458 Avicennia marina HOM05D005807 ORTHO05D007121 2.8e-60 235.0 110 100.0
Migut.N02895 Erythranthe guttata HOM05D005807 ORTHO05D007121 2.1e-15 85.9 68 58.8
MSTRG.22154 Avicennia marina HOM05D005807 ORTHO05D007121 2.8e-15 85.5 54 68.5
SalBow7G1665 Salvia bowleyana HOM05D005807 ORTHO05D007121 2.8e-15 85.5 53 69.8
Aqoxy168s004 Aquilegia oxysepala HOM05D005807 ORTHO05D007121 1.4e-14 83.2 54 64.8
Aqoxy2G00908 Aquilegia oxysepala HOM05D005807 ORTHO05D007121 1.4e-14 83.2 54 64.8
TWI36G1710 Tripterygium wilfordii HOM05D005807 ORTHO05D007121 1.8e-14 82.8 54 66.7
GSVIVG01038735001 Vitis vinifera HOM05D005807 ORTHO05D007121 2.4e-14 82.4 67 56.7
Actinidia29698 Actinidia chinensis HOM05D005807 ORTHO05D007121 3.1e-14 82.0 44 79.5
PSO339G6415 Papaver somniferum HOM05D005807 ORTHO05D007121 3.1e-14 82.0 60 60.0
PSO801G0778 Papaver somniferum HOM05D005807 ORTHO05D007121 3.1e-14 82.0 60 60.0
Nn2g13704 Nelumbo nucifera HOM05D005807 ORTHO05D007121 5.2e-14 81.3 54 66.7
TAR636G1782 Trochodendron aralioides HOM05D005807 ORTHO05D007121 5.2e-14 81.3 44 79.5
CAN.G394.126 Capsicum annuum HOM05D005807 ORTHO05D007121 6.9e-14 80.9 53 66.0
Dinv34391 Davidia involucrata HOM05D005807 ORTHO05D007121 6.9e-14 80.9 54 66.7
MD11G1074800 Malus domestica HOM05D005807 ORTHO05D007121 6.9e-14 80.9 54 64.8
Oeu025375.1 Olea europaea HOM05D005807 ORTHO05D007121 6.9e-14 80.9 54 64.8
vmacro10049 Vaccinium macrocarpon HOM05D005807 ORTHO05D007121 6.9e-14 80.9 54 64.8
CSS0007250 Camellia sinensis var. sinensis HOM05D005807 ORTHO05D007121 9.0e-14 80.5 44 79.5
arahy.Tifrunner.gnm1.ann1.8F6K17 Arachis hypogaea HOM05D005807 ORTHO05D007121 1.2e-13 80.1 54 64.8
arahy.Tifrunner.gnm1.ann1.B02C3Y Arachis hypogaea HOM05D005807 ORTHO05D007121 1.2e-13 80.1 54 64.8
Hma1.2p1_0703F.1_g206510 Hydrangea macrophylla HOM05D005807 ORTHO05D007121 1.2e-13 80.1 44 77.3
Lsat_1_v5_gn_2_122940 Lactuca sativa HOM05D005807 ORTHO05D007121 1.2e-13 80.1 52 67.3
Carub.0008s1936 Capsella rubella HOM05D005807 ORTHO05D007121 1.5e-13 79.7 67 52.2
FvH4_3g38540 Fragaria vesca HOM05D005807 ORTHO05D007121 1.5e-13 79.7 54 63.0
FAN11G3045 Fragaria x ananassa HOM05D005807 ORTHO05D007121 1.5e-13 79.7 54 63.0
Hund18849 Selenicereus undatus HOM05D005807 ORTHO05D007121 1.5e-13 79.7 44 77.3
unitig_8.g3606 Utricularia gibba HOM05D000298 ORTHO05D001646 1.5e-13 79.7 69 52.2
FAN21G1466 Fragaria x ananassa HOM05D005807 ORTHO05D007121 2.0e-13 79.3 54 61.1
Sopen06g033340 Solanum pennellii HOM05D005807 ORTHO05D007121 2.0e-13 79.3 53 64.2
TWI31G0235 Tripterygium wilfordii HOM05D005807 ORTHO05D007121 2.0e-13 79.3 44 77.3
Solyc06g076940.3 Solanum lycopersicum HOM05D005807 ORTHO05D007121 2.6e-13 79.0 53 62.3
Ah.15g099940 Amaranthus hybridus HOM05D005807 ORTHO05D007121 3.4e-13 78.6 44 77.3
Lalb_Chr18g0050921 Lupinus albus HOM05D005807 ORTHO05D007121 3.4e-13 78.6 67 52.2
Potri.001G251204 Populus trichocarpa HOM05D005807 ORTHO05D007121 3.4e-13 78.6 54 63.0
RcHm_v2.0_Chr5g0069441 Rosa chinensis HOM05D005807 ORTHO05D007121 3.4e-13 78.6 54 61.1
SGA_v2.0_scaffold92G28310 Striga asiatica HOM05D005807 ORTHO05D007121 3.4e-13 78.6 60 61.7
Haze_24321 Corylus avellana HOM05D005807 ORTHO05D007121 4.4e-13 78.2 49 69.4
HanXRQChr07g0202931 Helianthus annuus HOM05D005807 ORTHO05D007121 4.4e-13 78.2 52 63.5
Nitab4.5_0000010g0300 Nicotiana tabacum HOM05D005807 ORTHO05D007121 4.4e-13 78.2 43 74.4
Nitab4.5_0008156g0020 Nicotiana tabacum HOM05D005807 ORTHO05D007121 4.4e-13 78.2 43 74.4
Prupe.6G057600 Prunus persica HOM05D005807 ORTHO05D007121 4.4e-13 78.2 53 64.2
CiPaw.14G059700 Carya illinoinensis HOM05D005807 ORTHO05D007121 5.8e-13 77.8 54 63.0
AUR62001647 Chenopodium quinoa HOM05D005807 ORTHO05D007121 5.8e-13 77.8 44 77.3
AUR62020129 Chenopodium quinoa HOM05D005807 ORTHO05D007121 5.8e-13 77.8 44 77.3
Cc05_g09980 Coffea canephora HOM05D005807 ORTHO05D007121 5.8e-13 77.8 51 68.6
MD03G1070800 Malus domestica HOM05D005807 ORTHO05D007121 5.8e-13 77.8 53 64.2
Peaxi162Scf00540g00427 Petunia axillaris HOM05D005807 ORTHO05D007121 5.8e-13 77.8 53 62.3
Psat5g159160 Pisum sativum HOM05D005807 ORTHO05D007121 7.6e-13 77.4 54 61.1
PGR102G0477 Punica granatum HOM05D005807 ORTHO05D007121 7.6e-13 77.4 44 75.0
Atru.chr3.4221 Acer truncatum HOM05D005807 ORTHO05D007121 9.9e-13 77.0 67 53.7
CDE06G1535 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 9.9e-13 77.0 60 55.0
CDE06G1924 Ceratophyllum demersum HOM05D005807 ORTHO05D007121 9.9e-13 77.0 60 55.0
Glyma.11G175500 Glycine max HOM05D005807 ORTHO05D007121 9.9e-13 77.0 68 51.5
Glyma.18G063100 Glycine max HOM05D005807 ORTHO05D007121 9.9e-13 77.0 54 61.1
HanXRQChr08g0221811 Helianthus annuus HOM05D005807 ORTHO05D007121 9.9e-13 77.0 52 63.5
Lj5g0019578 Lotus japonicus HOM05D005807 ORTHO05D007121 9.9e-13 77.0 54 61.1
Cfa011694 Carpinus fangiana HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 61.1
ClCG03G000770 Citrullus lanatus HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 61.1
MELO3C020551.2 Cucumis melo HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 61.1
Duzib150G0199 Durio zibethinus HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 63.0
Duzib168G1045 Durio zibethinus HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 63.0
Gohir.A13G224500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 63.0
Gohir.D13G229500 Gossypium hirsutum HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 63.0
Gorai.013G260200 Gossypium raimondii HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 63.0
MBI14_g11284_MAGBIO Magnolia biondii HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 59.3
Medtr3g463620 Medicago truncatula HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 61.1
Thecc.09G301900 Theobroma cacao HOM05D005807 ORTHO05D007121 1.3e-12 76.6 54 63.0
CiPaw.13G077700 Carya illinoinensis HOM05D005807 ORTHO05D007121 1.7e-12 76.3 54 63.0
Ciclev10029472m.g Citrus clementina HOM05D005807 ORTHO05D007121 1.7e-12 76.3 67 50.7
Phvul.006G068000 Phaseolus vulgaris HOM05D005807 ORTHO05D007121 1.7e-12 76.3 54 59.3
PGSC0003DMG400030355 Solanum tuberosum HOM05D005807 ORTHO05D007121 1.7e-12 76.3 53 62.3
MBI14_g43437_MAGBIO Magnolia biondii HOM05D005807 ORTHO05D007121 2.2e-12 75.9 44 70.5
HPP92_000412 Vanilla planifolia HOM05D005807 ORTHO05D007121 2.2e-12 75.9 67 50.7
Actinidia13933 Actinidia chinensis HOM05D005807 ORTHO05D007121 2.9e-12 75.5 54 59.3
BcaC04g19835 Brassica carinata HOM05D005807 ORTHO05D007121 2.9e-12 75.5 54 59.3
C09p50820 Brassica napus HOM05D005807 ORTHO05D007121 2.9e-12 75.5 54 59.3
CANSAT25G1325 Cannabis sativa HOM05D005807 ORTHO05D007121 2.9e-12 75.5 54 59.3
CARHR272650 Cardamine hirsuta HOM05D005807 ORTHO05D007121 2.9e-12 75.5 67 50.7
CsaV3_1G036170 Cucumis sativus L. HOM05D005807 ORTHO05D007121 2.9e-12 75.5 54 59.3
AL8G35020 Arabidopsis lyrata HOM05D005807 ORTHO05D007121 3.8e-12 75.1 67 50.7
AT5G58740 Arabidopsis thaliana HOM05D005807 ORTHO05D007121 3.8e-12 75.1 67 50.7
A10p15530 Brassica napus HOM05D005807 ORTHO05D007121 3.8e-12 75.1 67 50.7
BolC9t57942H Brassica oleracea HOM05D005807 ORTHO05D007121 3.8e-12 75.1 67 50.7
BraA10t43680Z Brassica rapa HOM05D005807 ORTHO05D007121 3.8e-12 75.1 67 50.7
Manes.02G119500 Manihot esculenta HOM05D005807 ORTHO05D007121 3.8e-12 75.1 54 59.3
Sed0012142 Sechium edule HOM05D005807 ORTHO05D007121 3.8e-12 75.1 54 59.3
SEGI_25973 Sequoiadendron giganteum HOM05D005807 ORTHO05D007121 3.8e-12 75.1 53 60.4
Cpa.g.sc62.98 Carica papaya HOM05D005807 ORTHO05D007121 4.9e-12 74.7 54 59.3
Thhalv10014898m.g Eutrema salsugineum HOM05D005807 ORTHO05D007121 4.9e-12 74.7 67 50.7
Sp6g20430 Schrenkiella parvula HOM05D005807 ORTHO05D007121 4.9e-12 74.7 67 50.7
TPR.G21179 Trifolium pratense HOM05D005807 ORTHO05D007121 6.4e-12 74.3 54 59.3
VMungo0540G1230 Vigna mungo HOM05D005807 ORTHO05D007121 6.4e-12 74.3 54 57.4
EL10Ac7g16166 Beta vulgaris HOM05D005807 ORTHO05D007121 1.1e-11 73.6 44 72.7
BcaB01g04495 Brassica carinata HOM05D005807 ORTHO05D007121 1.1e-11 73.6 67 49.3
BcaB01g04639 Brassica carinata HOM05D005807 ORTHO05D007121 1.1e-11 73.6 67 49.3
DCAR_013059 Daucus carota HOM05D000043 ORTHO05D000223 1.1e-11 73.6 54 63.0
QL01p038261 Quercus lobata HOM05D005807 ORTHO05D007121 1.1e-11 73.6 54 57.4
THA.LOC104810714 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 1.1e-11 73.6 53 60.4
Zm00001eb233440 Zea mays HOM05D005807 ORTHO05D007121 1.1e-11 73.6 46 67.4
ECA238G3051 Erigeron canadensis HOM05D005807 ORTHO05D007121 1.4e-11 73.2 55 60.0
THA.LOC104814913 Tarenaya hassleriana HOM05D005807 ORTHO05D007121 1.4e-11 73.2 59 54.2
Lj6g0006671 Lotus japonicus HOM05D005807 ORTHO05D007121 1.9e-11 72.8 54 59.3
Os01g0668000 Oryza sativa ssp. japonica HOM05D005807 ORTHO05D007121 2.4e-11 72.4 58 55.2
ATR0618G394 Amborella trichopoda HOM05D005807 ORTHO05D007121 5.4e-11 71.2 52 57.7
Sc12g0000690 Simmondsia chinensis HOM05D005807 ORTHO05D007121 5.4e-11 71.2 43 69.8
Eucgr.B02255 Eucalyptus grandis HOM05D005807 ORTHO05D007121 7.1e-11 70.9 57 56.1
Manes.01G161700 Manihot esculenta HOM05D005807 ORTHO05D007121 2.1e-10 69.3 54 55.6
Mapoly0037s0041 Marchantia polymorpha HOM05D005807 ORTHO05D007121 4.6e-10 68.2 70 41.4
SMO116G0032 Selaginella moellendorffii HOM05D005807 ORTHO05D007121 1.0e-09 67.0 68 45.6
Sed0002691 Sechium edule HOM05D005807 ORTHO05D007121 3.9e-09 65.1 54 53.7
Pp3c16_190 Physcomitrium patens HOM05D005807 ORTHO05D007121 5.1e-09 64.7 78 38.5
Sabra16G0152900 Salix brachista HOM05D005807 ORTHO05D007121 1.1e-08 63.5 84 41.7
Aa31LG11G500 Aethionema arabicum HOM05D005807 ORTHO05D007121 2.5e-08 62.4 82 40.2
Oeu010994.1 Olea europaea HOM05D005807 ORTHO05D007121 2.4e-06 55.8 29 79.3
vmacro12095 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 4.0e-06 55.1 42 64.3


User provided reference genes

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