Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 5.4e-145 517.7 272 100.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 7.4e-102 374.4 268 74.3
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.1e-97 360.5 268 72.4
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.3e-85 320.5 268 67.5
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.3e-85 320.5 268 67.5
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.8e-84 316.6 271 66.1
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.3e-82 310.5 267 63.7
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 3.2e-81 305.8 267 62.9
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.2e-81 305.4 271 62.7
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.6e-80 303.5 267 62.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.1e-80 303.1 268 62.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 8.0e-80 301.2 270 62.2
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.4e-79 300.4 269 62.1
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 4.0e-79 298.9 268 61.6
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 5.2e-79 298.5 267 62.5
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.5e-78 297.0 267 62.2
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.7e-78 295.0 263 61.6
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 3.7e-77 292.4 267 60.7
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.1e-76 290.8 267 59.2
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.0e-74 282.0 266 57.9
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 7.2e-73 278.1 268 57.8
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 9.4e-73 277.7 283 57.2
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.6e-72 275.8 264 58.3
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 3.6e-72 275.8 269 58.4
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 8.0e-72 274.6 269 55.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.8e-71 271.2 261 56.3
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 4.4e-70 268.9 268 59.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 9.8e-70 267.7 269 55.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.2e-69 266.5 268 56.7
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-68 263.5 269 55.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.1e-68 262.3 261 55.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 7.0e-68 261.5 264 57.2
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 7.0e-68 261.5 270 53.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 7.0e-68 261.5 320 49.1
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.2e-67 260.8 261 55.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.5e-67 258.8 269 55.0
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.9e-67 258.5 268 54.1
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 7.7e-67 258.1 273 55.7
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.3e-66 257.3 270 54.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.3e-66 256.5 266 54.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.9e-66 256.1 268 54.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.9e-66 256.1 269 53.2
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.8e-66 255.8 268 53.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 6.6e-66 255.0 275 54.2
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.1e-65 254.2 264 53.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.6e-65 251.9 270 56.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 7.3e-65 251.5 269 54.6
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.1e-64 250.0 275 55.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.6e-64 249.2 264 54.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-64 249.2 269 53.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-64 249.2 269 53.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.7e-61 240.4 270 51.9
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 3.5e-59 232.6 275 53.1
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-58 230.3 276 51.1
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.7e-58 230.3 271 51.3
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.3e-58 229.9 269 52.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.3e-58 229.9 212 59.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.0e-58 229.6 263 53.2
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 5.0e-58 228.8 274 49.6
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.0e-58 228.8 269 50.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.5e-57 227.3 270 50.7
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.5e-57 227.3 326 45.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 7.3e-57 224.9 271 51.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 9.5e-57 224.6 276 51.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.2e-56 224.2 269 50.9
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.6e-56 223.8 269 49.4
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.8e-56 223.0 268 51.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.6e-56 222.6 268 50.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.7e-56 222.2 268 51.5
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 6.2e-56 221.9 338 43.8
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.8e-55 220.3 271 50.2
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.3e-55 219.9 268 50.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.5e-54 217.2 255 50.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 9.8e-54 214.5 269 48.3
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 6.4e-53 211.8 256 48.8
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.1e-52 211.1 326 43.9
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.1e-52 211.1 259 48.6
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.0e-51 206.8 265 48.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 6.0e-51 205.3 270 47.4
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.3e-50 204.1 175 61.1
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.0e-50 203.0 263 46.4
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 5.0e-50 202.2 270 47.8
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.6e-50 201.8 214 52.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.6e-49 198.7 230 50.4
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.1e-48 196.8 301 42.9
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.7e-48 195.7 270 45.6
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 8.1e-48 194.9 270 45.2
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 8.1e-48 194.9 305 42.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.1e-47 194.5 265 48.3
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.8e-47 193.7 266 47.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.1e-47 193.0 247 49.4
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.1e-47 193.0 269 47.2
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.9e-47 191.4 270 45.6
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.6e-46 189.9 262 44.3
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 3.4e-46 189.5 305 43.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 8.3e-45 184.9 326 42.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.9e-44 183.7 260 43.8
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.9e-44 183.7 309 43.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 5.4e-44 182.2 196 52.0
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 7.1e-44 181.8 268 47.0
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.7e-43 179.9 318 39.3
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 3.5e-43 179.5 273 44.0
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.6e-43 179.1 259 45.2
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.8e-43 178.3 272 46.0
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.8e-43 178.3 259 46.7
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.1e-41 174.5 266 40.2
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 4.3e-41 172.6 223 48.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 9.5e-41 171.4 242 45.9
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.6e-40 169.5 232 45.3
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.8e-39 167.2 278 41.7
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 4.0e-39 166.0 202 48.5
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.2e-38 164.5 244 43.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.6e-38 163.3 261 41.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.2e-37 160.2 269 39.4
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.4e-37 158.3 180 51.7
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.6e-35 154.1 271 39.9
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.1e-35 153.7 248 41.5
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 4.6e-35 152.5 279 39.4
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 4.6e-35 152.5 279 39.4
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 7.8e-35 151.8 303 37.0
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.3e-34 151.0 245 42.4
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.3e-33 146.4 245 39.2
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.1e-32 143.7 197 46.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.1e-32 143.7 271 38.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.6e-32 142.9 249 39.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 4.7e-32 142.5 239 40.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 6.2e-32 142.1 275 39.6
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 8.1e-32 141.7 275 38.9
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.9e-31 138.7 326 34.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.4e-30 136.3 233 37.8
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 5.8e-30 135.6 270 38.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.3e-29 134.4 246 38.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.7e-29 134.0 244 37.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-29 132.9 305 33.1
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 4.9e-29 132.5 225 40.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 6.4e-29 132.1 241 36.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-28 130.6 238 36.6
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 3.2e-28 129.8 305 35.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.4e-28 129.0 148 50.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.6e-27 127.5 236 36.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.6e-27 127.5 93 71.0
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.1e-27 127.1 263 37.3
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.0e-26 123.2 236 36.0
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.3e-24 117.9 85 69.4
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-24 117.5 93 66.7
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-23 112.8 311 30.9
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 5.3e-23 112.5 134 51.5
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 4.5e-22 109.4 135 51.1
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 7.6e-22 108.6 85 64.7
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-20 104.4 105 53.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 7.1e-20 102.1 79 63.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 7.1e-20 102.1 108 55.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-19 101.3 114 52.6
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.6e-19 100.9 265 34.3
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.0e-19 99.0 139 41.7
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.5e-17 94.4 246 31.3
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.1e-15 88.2 214 31.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.0e-14 84.0 230 31.3
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.8e-13 79.7 46 80.4
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 4.9e-13 79.3 66 62.1
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 6.4e-13 79.0 248 31.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.4e-13 78.6 92 46.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-12 78.2 92 46.7
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-12 77.4 220 30.9
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.9e-12 77.4 220 30.9
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 5.5e-12 75.9 271 29.5
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.6e-11 74.3 195 31.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 3.0e-10 70.1 207 29.0
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 5.1e-10 69.3 102 50.0
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 6.7e-10 68.9 91 46.2
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 9.6e-09 65.1 97 40.2
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 9.6e-09 65.1 97 40.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.6e-08 64.3 187 33.2
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.1e-08 62.0 231 28.6
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.0e-05 55.1 73 42.5


User provided reference genes

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