Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 8.6e-218 760.0 374 100.0
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.1e-135 485.7 351 70.7
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.2e-107 391.7 364 59.3
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 9.9e-97 357.8 363 55.4
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.3e-93 347.4 368 54.3
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.3e-92 342.8 374 54.8
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.6e-91 340.5 372 54.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.4e-90 337.4 375 54.1
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.8e-90 337.0 375 53.9
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 5.3e-90 335.5 367 53.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.2e-86 324.3 365 55.3
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.1e-84 317.8 372 52.4
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 4.3e-84 315.8 375 51.2
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.3e-83 314.3 383 52.0
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.4e-82 310.8 373 51.2
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.4e-82 310.8 373 51.2
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 2.9e-80 303.1 357 52.4
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.9e-80 303.1 372 49.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 4.2e-79 299.3 377 51.7
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 6.0e-78 295.4 366 48.4
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 3.0e-77 293.1 377 50.1
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 3.0e-77 293.1 377 50.1
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.9e-76 290.4 361 49.3
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.8e-75 286.6 366 47.8
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 6.2e-75 285.4 367 48.8
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 8.1e-75 285.0 353 49.3
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 5.3e-74 282.3 387 48.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.9e-74 282.0 382 47.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 9.0e-74 281.6 380 49.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.0e-73 280.4 368 47.6
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.6e-73 280.0 380 47.4
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 3.4e-73 279.6 375 47.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.5e-73 279.3 379 47.5
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.8e-73 278.9 381 48.6
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.6e-73 278.5 387 48.1
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.9e-72 276.6 395 46.6
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.1e-71 274.6 337 51.0
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.2e-71 272.7 359 47.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.2e-70 271.2 383 47.0
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.6e-70 270.8 364 46.2
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.5e-70 269.6 409 45.0
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 4.6e-70 269.2 368 47.0
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.6e-70 269.2 375 46.4
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.6e-70 269.2 375 46.9
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 4.6e-70 269.2 374 46.8
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.9e-69 266.2 362 47.2
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 6.7e-69 265.4 375 46.1
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.5e-68 264.2 347 45.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 8.2e-67 258.5 366 48.4
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 4.0e-66 256.1 379 45.1
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.3e-66 255.8 378 46.0
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 6.9e-66 255.4 372 45.2
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.0e-65 253.8 340 49.4
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 4.5e-65 252.7 371 46.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.0e-64 251.5 439 39.6
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-63 247.7 367 46.3
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.9e-63 247.3 378 45.5
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 3.2e-63 246.5 380 40.8
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 3.2e-63 246.5 379 43.5
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.8e-61 240.7 365 44.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.1e-60 238.0 373 40.8
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.5e-60 236.9 371 43.7
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 3.7e-59 233.0 368 42.9
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 4.8e-59 232.6 383 40.5
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.4e-58 231.1 385 41.8
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 4.1e-58 229.6 370 43.5
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 9.0e-58 228.4 358 41.6
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 9.0e-58 228.4 369 40.7
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.2e-57 228.0 380 43.2
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.2e-57 228.0 355 41.7
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.6e-57 226.9 361 41.8
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.6e-57 226.9 361 42.7
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.4e-57 226.5 223 57.4
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 7.7e-57 225.3 368 42.1
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 7.7e-57 225.3 364 41.8
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.0e-56 224.9 353 41.4
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 1.0e-56 224.9 355 42.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.0e-56 224.9 359 40.1
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.3e-56 224.6 358 41.6
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 5.0e-56 222.6 389 38.3
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.9e-55 220.7 397 41.6
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.9e-55 220.7 385 38.2
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.5e-55 220.3 373 42.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 7.2e-55 218.8 361 40.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.2e-54 218.0 388 39.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-54 216.5 360 40.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.6e-54 216.1 360 40.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.6e-54 216.1 357 40.6
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.0e-53 214.9 381 38.6
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-53 214.5 360 40.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.9e-53 213.0 431 38.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.8e-51 206.8 334 41.3
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 6.9e-50 202.2 367 40.3
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 2.6e-49 200.3 426 37.8
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.5e-49 199.5 373 38.9
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 3.8e-48 196.4 331 42.0
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 6.5e-48 195.7 382 38.7
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 4.2e-47 193.0 361 39.3
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 4.2e-47 193.0 359 40.7
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.1e-46 190.7 344 41.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.8e-45 187.6 360 40.0
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.8e-43 179.5 136 70.6
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 3.1e-42 176.8 355 35.2
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 4.1e-42 176.4 353 38.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.5e-41 174.5 364 36.8
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.5e-41 173.3 363 34.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.5e-41 173.3 195 52.3
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.5e-41 172.9 200 50.5
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 5.9e-41 172.6 208 49.5
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 7.7e-41 172.2 303 39.9
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.9e-39 167.5 186 52.2
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 9.4e-39 165.2 299 40.5
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.2e-38 164.9 190 50.5
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.1e-38 164.1 373 34.6
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.1e-38 164.1 367 37.1
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 2.7e-38 163.7 389 34.2
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 3.6e-38 163.3 224 44.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.4e-37 161.4 356 35.7
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.3e-37 160.6 197 46.7
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 2.3e-37 160.6 281 42.0
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.5e-36 157.9 377 34.7
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.5e-33 146.7 177 46.9
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 6.5e-32 142.5 366 31.4
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-30 137.5 123 51.2
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 9.7e-28 128.6 358 31.3
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 5.5e-23 112.8 111 57.7
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 4.7e-22 109.8 232 38.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-17 95.1 155 36.1
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.6e-17 94.7 113 53.1
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.1e-15 88.6 182 34.6
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.9e-15 87.8 130 40.8
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-14 85.1 155 34.8
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.8e-14 84.0 162 32.7
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 6.1e-14 82.8 149 36.2
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.8e-13 81.3 149 35.6
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.2e-13 79.7 160 30.0
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 5.7e-12 76.3 328 27.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 7.3e-07 59.3 157 28.0
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 7.3e-07 59.3 157 28.0
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 7.3e-07 59.3 157 28.0
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 7.3e-07 59.3 157 28.0
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 9.5e-07 58.9 157 28.0
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 9.5e-07 58.9 157 27.4
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 157 27.4


User provided reference genes

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