Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 1.9e-212 742.3 372 100.0
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 8.8e-146 520.8 336 75.0
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 1.1e-145 520.4 335 76.4
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 5.4e-119 431.8 341 63.0
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 9.1e-119 431.0 336 63.1
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 7.2e-116 421.4 339 61.1
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.2e-115 420.6 346 61.0
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.2e-115 420.6 346 61.3
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 3.6e-115 419.1 341 60.7
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.4e-114 417.2 334 65.9
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 7.5e-113 411.4 334 64.7
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 4.1e-111 405.6 337 59.3
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 2.7e-110 402.9 327 64.2
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 7.8e-110 401.4 334 61.7
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 3.8e-109 399.1 342 59.6
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 1.9e-108 396.7 335 62.1
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 9.5e-108 394.4 347 58.5
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 3.6e-107 392.5 337 61.1
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 3.6e-107 392.5 342 58.5
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 1.4e-106 390.6 342 58.8
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 5.7e-105 385.2 342 59.6
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 5.7e-105 385.2 343 59.2
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 3.7e-104 382.5 342 57.6
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 3.7e-104 382.5 373 55.2
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 4.9e-104 382.1 343 56.6
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 4.9e-104 382.1 350 57.4
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.1e-103 380.9 344 59.0
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 1.1e-103 380.9 337 56.1
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 1.2e-102 377.5 338 56.8
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 3.5e-102 375.9 333 58.9
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 1.3e-101 374.0 344 55.5
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 2.3e-101 373.2 330 56.4
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 3.9e-101 372.5 340 57.1
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 1.1e-100 370.9 344 54.7
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 1.5e-100 370.5 342 58.2
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 7.3e-100 368.2 343 55.1
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 3.6e-99 365.9 333 57.7
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 4.7e-99 365.5 342 54.4
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 4.7e-99 365.5 347 56.2
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 1.4e-98 364.0 348 55.7
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 1.4e-98 364.0 340 56.5
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 1.8e-98 363.6 337 55.5
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 2.3e-98 363.2 346 55.2
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 7.5e-97 358.2 338 55.9
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.3e-96 357.5 303 59.1
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.7e-96 357.1 342 55.0
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.4e-95 353.2 362 52.8
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 5.4e-95 352.1 349 54.2
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 7.0e-95 351.7 342 55.6
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 9.2e-95 351.3 340 55.0
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 1.0e-93 347.8 270 64.8
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 1.3e-93 347.4 339 54.3
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.9e-93 345.9 354 53.1
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 3.9e-93 345.9 339 55.2
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 5.0e-93 345.5 330 52.7
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 6.6e-93 345.1 342 54.4
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 1.9e-92 343.6 346 53.8
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 1.9e-92 343.6 333 53.5
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 2.5e-92 343.2 342 54.7
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 3.3e-92 342.8 342 55.0
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 4.3e-92 342.4 344 52.0
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 7.3e-92 341.7 346 50.9
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 9.5e-92 341.3 330 53.6
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 3.1e-90 336.3 331 53.2
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 4.0e-90 335.9 324 53.4
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.5e-89 334.0 345 52.5
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.5e-89 334.0 276 63.0
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 9.8e-89 331.3 340 52.6
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 1.3e-88 330.9 334 51.5
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 1.3e-88 330.9 340 52.6
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 4.9e-88 328.9 338 50.6
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 6.4e-88 328.6 342 52.0
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 1.1e-87 327.8 334 51.2
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 4.1e-87 325.9 345 51.3
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 2.1e-86 323.6 350 48.9
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 1.3e-85 320.9 323 51.1
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 2.3e-85 320.1 276 59.4
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 3.9e-85 319.3 336 51.8
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 5.1e-85 318.9 338 49.7
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 3.3e-84 316.2 351 48.1
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 1.2e-83 314.3 353 47.9
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 6.2e-83 312.0 277 58.8
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 6.2e-83 312.0 344 48.3
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 1.4e-82 310.8 427 42.4
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 4.9e-80 302.4 336 50.6
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 5.1e-77 292.4 338 47.3
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 8.6e-77 291.6 342 46.5
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 3.1e-74 283.1 212 67.0
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 2.2e-72 276.9 212 64.6
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.5e-68 264.2 336 44.0
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 3.0e-61 240.0 171 69.6
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 2.8e-51 206.8 324 37.0
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 8.2e-51 205.3 232 50.9
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 6.7e-45 185.7 292 41.8
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.9e-44 184.1 177 55.4
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 6.1e-38 162.5 193 46.1
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 7.4e-36 155.6 353 32.3
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 2.6e-33 147.1 257 34.2
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 1.0e-29 135.2 264 34.8
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 5.1e-29 132.9 195 40.5
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 8.8e-29 132.1 129 55.0
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 9.1e-26 122.1 91 68.1
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.0e-24 118.6 166 40.4
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.2e-24 117.5 152 40.8
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 2.5e-23 114.0 85 65.9
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 1.8e-21 107.8 148 44.6
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 3.0e-21 107.1 128 44.5
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 6.7e-21 105.9 128 46.9
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 1.5e-15 88.2 109 43.1
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 6.7e-13 79.3 85 42.4
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 1.8e-10 71.2 73 45.2
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 1.6e-06 58.2 39 64.1
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 4.7e-06 56.6 62 46.8
HPP92_009560 Vanilla planifolia HOM05D001084 ORTHO05D001275 8.0e-06 55.8 60 40.0


User provided reference genes

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