Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 8.7e-78 293.5 143 100.0
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 1.8e-43 179.5 133 70.7
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 8.0e-31 137.5 135 54.1
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 8.0e-31 137.5 135 54.1
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 1.5e-29 133.3 133 53.4
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 2.6e-29 132.5 129 54.3
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 3.4e-29 132.1 123 53.7
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 5.8e-29 131.3 123 56.9
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 9.8e-29 130.6 128 53.1
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 9.8e-29 130.6 128 53.1
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 1.3e-28 130.2 122 54.1
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 1.7e-28 129.8 127 51.2
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 4.9e-28 128.3 127 52.8
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 8.3e-28 127.5 127 49.6
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 1.1e-27 127.1 128 54.7
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 1.1e-27 127.1 123 54.5
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 1.8e-27 126.3 133 52.6
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 3.2e-27 125.6 121 51.2
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 5.4e-27 124.8 126 54.8
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 7.0e-27 124.4 128 55.5
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 1.2e-26 123.6 120 53.3
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.2e-26 123.6 103 61.2
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 2.7e-26 122.5 103 61.2
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 3.5e-26 122.1 131 51.1
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 3.5e-26 122.1 131 51.9
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 4.6e-26 121.7 126 53.2
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 7.8e-26 120.9 131 51.9
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 1.0e-25 120.6 130 49.2
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 2.3e-25 119.4 118 54.2
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 5.0e-25 118.2 118 50.0
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 6.6e-25 117.9 136 50.0
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.5e-24 116.7 128 48.4
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 1.5e-24 116.7 130 50.0
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 1.9e-24 116.3 123 52.8
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 2.5e-24 115.9 124 52.4
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 2.5e-24 115.9 124 52.4
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 3.3e-24 115.5 108 55.6
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 4.3e-24 115.2 125 46.4
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 4.3e-24 115.2 117 50.4
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 4.3e-24 115.2 124 49.2
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 5.6e-24 114.8 119 50.4
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 9.5e-24 114.0 122 49.2
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 9.5e-24 114.0 119 49.6
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 9.5e-24 114.0 125 48.8
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 1.2e-23 113.6 129 49.6
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 1.6e-23 113.2 120 50.0
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 2.1e-23 112.8 120 49.2
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 2.1e-23 112.8 123 48.8
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 2.8e-23 112.5 122 47.5
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 3.6e-23 112.1 120 50.0
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 3.6e-23 112.1 120 48.3
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 3.6e-23 112.1 130 49.2
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 6.2e-23 111.3 120 49.2
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 6.2e-23 111.3 120 48.3
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 6.2e-23 111.3 120 47.5
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 6.2e-23 111.3 120 47.5
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 6.2e-23 111.3 120 47.5
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 6.2e-23 111.3 120 48.3
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 6.2e-23 111.3 130 50.8
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 8.0e-23 110.9 120 47.5
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 8.0e-23 110.9 124 46.0
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 1.1e-22 110.5 120 48.3
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 1.4e-22 110.2 127 46.5
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 2.3e-22 109.4 120 47.5
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 2.3e-22 109.4 120 47.5
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 2.3e-22 109.4 130 50.0
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 6.8e-22 107.8 130 46.9
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 8.9e-22 107.5 120 47.5
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 8.9e-22 107.5 120 45.8
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 1.5e-21 106.7 123 43.1
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.5e-21 106.7 123 42.3
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.5e-21 106.7 123 42.3
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 3.4e-21 105.5 122 47.5
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 3.4e-21 105.5 130 46.2
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.8e-21 104.8 124 45.2
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 1.3e-20 103.6 103 51.5
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 2.2e-20 102.8 125 43.2
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 2.9e-20 102.4 123 46.3
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 8.3e-20 100.9 121 45.5
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 8.3e-20 100.9 122 45.1
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 2.4e-19 99.4 103 52.4
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 1.2e-18 97.1 101 47.5
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.6e-18 96.7 133 42.1
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 4.6e-18 95.1 108 50.9
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 6.0e-18 94.7 98 54.1
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.3e-17 93.6 136 38.2
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 2.3e-17 92.8 121 43.8
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 3.9e-17 92.0 103 51.5
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 5.0e-17 91.7 117 44.4
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 2.0e-13 79.7 81 49.4
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 2.2e-12 76.3 82 46.3
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 1.1e-11 73.9 106 46.2
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 1.6e-10 70.1 49 61.2
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 1.6e-10 70.1 104 41.3
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 4.6e-10 68.6 61 54.1
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 4.6e-10 68.6 83 44.6
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 4.6e-10 68.6 83 44.6
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 4.3e-08 62.0 68 48.5
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 2.1e-07 59.7 80 42.5
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 8.1e-07 57.8 65 44.6
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 5.2e-06 55.1 88 39.8
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 6.8e-06 54.7 77 42.9


User provided reference genes

Program Settings