Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.7e-146 521.2 259 100.0
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-122 443.0 247 87.9
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.4e-118 429.1 229 91.3
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.6e-117 426.4 229 90.4
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 6.0e-117 424.5 229 90.0
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.3e-116 422.5 227 90.3
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.9e-115 419.5 230 88.7
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 2.5e-115 419.1 229 89.1
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 3.3e-115 418.7 227 88.5
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 3.3e-115 418.7 227 88.5
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.3e-115 418.7 229 88.2
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 5.6e-115 417.9 228 88.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 5.6e-115 417.9 229 88.6
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 9.5e-115 417.2 227 89.0
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.6e-114 416.4 229 88.2
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.6e-114 416.4 227 89.0
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.1e-114 416.0 227 88.1
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.1e-114 416.0 227 89.4
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.1e-114 416.0 227 88.5
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 2.8e-114 415.6 227 88.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.6e-114 415.2 229 87.3
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 3.6e-114 415.2 227 88.1
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 3.6e-114 415.2 229 88.2
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 4.7e-114 414.8 227 88.5
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 4.7e-114 414.8 227 88.5
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.2e-114 414.5 226 88.5
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 6.2e-114 414.5 226 88.5
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 6.2e-114 414.5 227 88.1
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.1e-113 413.7 229 86.9
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.1e-113 413.7 227 88.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.4e-113 413.3 229 87.3
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.4e-113 413.3 227 88.1
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.8e-113 412.9 227 87.7
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.3e-113 412.5 226 88.1
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.3e-113 412.5 227 87.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 2.3e-113 412.5 227 88.5
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 3.1e-113 412.1 229 86.9
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 4.0e-113 411.8 229 86.5
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 4.0e-113 411.8 227 87.7
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 4.0e-113 411.8 227 87.2
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 5.2e-113 411.4 229 87.3
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 5.2e-113 411.4 227 88.1
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 5.2e-113 411.4 229 87.3
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 6.8e-113 411.0 229 86.5
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 8.9e-113 410.6 227 86.8
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 8.9e-113 410.6 227 87.2
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 8.9e-113 410.6 227 86.3
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.2e-112 410.2 229 87.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.0e-112 409.5 227 87.2
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 2.0e-112 409.5 227 86.8
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.0e-112 409.5 227 87.2
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 2.0e-112 409.5 227 86.8
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.6e-112 409.1 246 82.9
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.6e-112 409.1 229 85.6
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.6e-112 409.1 229 86.0
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.6e-112 409.1 229 86.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.6e-112 409.1 227 88.5
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.4e-112 408.7 227 87.7
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.4e-112 408.3 227 86.3
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.4e-112 408.3 227 86.3
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 7.5e-112 407.5 228 86.0
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.7e-111 406.4 227 85.0
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.7e-111 406.4 231 85.7
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 3.7e-111 405.2 231 85.3
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.9e-111 404.8 227 87.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 8.3e-111 404.1 229 85.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.1e-110 403.7 227 86.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 2.4e-110 402.5 219 88.1
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 5.4e-110 401.4 227 86.8
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 9.2e-110 400.6 226 85.4
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 7.8e-109 397.5 227 83.3
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 7.8e-109 397.5 227 84.1
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.3e-108 396.0 227 84.1
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.3e-108 396.0 227 84.1
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.3e-108 396.0 227 84.1
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.3e-108 396.0 227 84.1
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 2.3e-108 396.0 226 84.1
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.3e-108 396.0 227 84.1
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.9e-108 395.2 227 83.7
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 5.1e-108 394.8 227 83.7
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 8.6e-108 394.0 228 81.6
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.9e-107 392.9 227 83.7
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.6e-107 391.3 229 83.8
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 9.5e-107 390.6 227 82.8
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.2e-106 390.2 227 85.5
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-106 389.8 238 79.0
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.6e-106 389.8 227 82.8
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.8e-106 389.0 227 82.4
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 4.7e-106 388.3 227 81.9
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 4.7e-106 388.3 236 80.9
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 6.2e-106 387.9 227 81.9
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 8.1e-106 387.5 227 83.3
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 8.1e-106 387.5 227 81.9
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-105 387.1 284 70.8
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.8e-105 386.3 227 81.5
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.2e-104 383.6 227 81.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 5.8e-104 381.3 227 81.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 7.1e-102 374.4 229 78.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 4.6e-101 371.7 201 89.1
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 4.6e-101 371.7 204 88.7
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 3.0e-100 369.0 202 89.6
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.8e-98 362.5 229 74.2
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 3.6e-98 362.1 227 76.2
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.6e-98 362.1 227 79.3
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 1.4e-97 360.1 201 86.6
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 4.9e-95 351.7 187 91.4
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 4.9e-95 351.7 191 89.5
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 1.1e-94 350.5 210 79.0
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.2e-94 349.0 226 72.1
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.2e-94 349.0 226 72.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 5.4e-94 348.2 201 82.6
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 9.2e-94 347.4 191 88.0
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.6e-93 346.7 189 88.4
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.0e-92 344.0 187 89.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 5.1e-92 341.7 249 70.7
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 4.3e-91 338.6 185 90.8
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 7.3e-91 337.8 190 86.3
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 9.6e-91 337.4 227 72.7
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.8e-90 335.9 231 74.5
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 3.6e-90 335.5 226 70.4
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 9.0e-89 330.9 229 73.4
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 4.4e-88 328.6 185 85.4
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 2.6e-80 302.8 187 82.4
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 4.5e-80 302.0 226 66.8
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 7.6e-80 301.2 162 88.9
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.6e-77 293.5 355 48.2
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.1e-73 279.3 160 83.1
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.4e-65 253.8 160 73.8
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.8e-58 228.8 122 88.5
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 4.1e-57 225.7 154 69.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.1e-53 213.4 131 76.3
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.2e-34 148.3 140 56.4
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.3e-26 122.1 69 84.1
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 2.5e-22 110.2 62 75.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.7e-18 97.4 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 2.7e-16 90.1 121 48.8
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 6.6e-15 85.5 84 53.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 8.6e-15 85.1 45 84.4
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.3e-12 77.0 82 48.8
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 5.2e-12 75.9 52 63.5
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.2e-08 64.7 47 66.0
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.7e-07 60.8 82 46.3


User provided reference genes

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