Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1654.0 839 100.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1446.8 840 86.3
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1396.7 874 81.5
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1373.2 823 82.9
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 841 81.3
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 808 83.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1345.5 809 83.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 809 82.3
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 814 83.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 814 83.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1332.4 837 80.9
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 818 82.9
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1325.1 840 80.4
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 833 81.4
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 808 82.2
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 842 78.7
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 842 75.1
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 835 79.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 835 78.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 841 80.4
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 835 79.3
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 813 81.1
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 822 80.7
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 824 80.2
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 799 81.7
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 812 80.9
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 817 80.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 824 80.1
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 825 79.0
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 819 80.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 813 81.9
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 867 76.7
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 826 79.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 841 78.1
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 837 79.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 812 80.4
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 844 78.9
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 822 79.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 815 81.2
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 842 78.6
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 812 79.3
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 840 79.8
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 835 77.4
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 838 78.9
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 839 78.3
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 813 80.6
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 809 79.2
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 814 81.3
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 820 78.8
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 820 79.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 821 80.5
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 835 77.0
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 818 78.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 822 79.6
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 843 78.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 822 79.4
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 838 77.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 840 79.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 841 77.6
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 807 79.3
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 843 77.8
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 831 77.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 824 79.7
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 840 79.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 815 80.7
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 816 79.3
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 805 79.1
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 815 79.9
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 843 77.6
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 843 77.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 848 73.6
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 818 77.6
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 826 80.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 832 77.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 839 77.1
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 807 78.9
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 812 78.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 827 78.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 825 78.3
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 816 80.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 863 76.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 799 79.7
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 829 79.1
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 808 78.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 837 76.5
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 837 78.7
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 822 77.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 813 80.2
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 840 76.8
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 830 77.1
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 842 76.1
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 905 72.6
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 824 79.1
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 822 77.1
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 839 77.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 830 78.0
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 839 78.1
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 821 79.0
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1239.2 841 76.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1237.6 825 77.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1235.3 810 78.0
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 813 76.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 818 75.8
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1231.1 813 76.5
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 807 77.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 807 77.8
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 807 77.8
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 818 77.8
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 813 76.6
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 809 77.5
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 838 77.6
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 814 76.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 807 77.8
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 837 75.6
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 837 75.6
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 837 75.6
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 837 75.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 779 78.2
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 810 76.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1218.4 817 75.9
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1216.4 880 72.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 781 79.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1203.7 818 76.7
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 818 76.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1196.8 850 71.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 798 74.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1191.0 823 75.0
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1185.2 772 79.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 877 71.7
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 818 74.2
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1164.4 834 74.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 809 73.2
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1155.2 691 82.8
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1146.0 818 74.9
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1144.4 824 70.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1142.5 755 76.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1139.0 838 71.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1123.6 723 80.8
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1107.8 824 69.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1096.6 814 69.5
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1085.5 807 69.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1078.5 768 70.6
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.1e-281 973.4 606 78.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.7e-266 922.9 579 73.9
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.6e-254 882.5 521 82.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-252 877.1 839 59.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 7.0e-252 874.4 607 71.3
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 6.4e-245 851.3 535 81.1
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.9e-173 613.2 716 51.3
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.5e-161 572.0 458 63.5
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.8e-137 491.9 348 79.6
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.4e-135 487.3 329 73.6
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.7e-131 473.0 316 82.3
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-100 371.7 398 54.0
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 5.5e-95 353.2 263 68.4
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.3e-87 325.9 581 44.2
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.7e-59 235.3 156 75.6
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.2e-51 208.4 132 76.5
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 5.7e-44 183.7 165 56.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 5.7e-36 157.1 475 29.9
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 7.3e-31 140.2 76 86.8
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 9.5e-31 139.8 460 27.4
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.1e-30 137.1 463 27.0
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.4e-26 125.2 63 92.1
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.5e-25 121.3 96 65.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.3e-24 119.4 440 26.8
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.5e-23 115.9 468 27.4
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 6.8e-21 107.1 150 45.3
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 9.2e-18 96.7 60 73.3
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.2e-18 96.7 104 50.0
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-16 90.1 266 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 8.6e-16 90.1 220 31.4
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.8e-14 85.1 83 50.6
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.1e-07 63.2 126 32.5
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-07 62.8 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.5e-07 62.0 38 78.9


User provided reference genes

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