Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 5.9e-236 820.5 410 100.0
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.6e-164 581.6 412 71.8
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.6e-161 573.2 408 70.1
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.0e-158 563.9 410 68.3
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 2.5e-154 549.3 409 68.2
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.8e-153 545.8 408 65.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.9e-150 535.8 408 66.9
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 8.7e-147 524.2 487 58.1
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.3e-142 510.4 411 63.3
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.1e-141 507.3 408 61.0
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.1e-141 507.3 411 62.5
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.1e-141 507.3 411 62.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 3.2e-141 505.8 411 62.5
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.6e-140 503.4 411 62.8
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.5e-138 496.9 410 61.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.3e-138 495.4 408 62.3
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 7.4e-138 494.6 410 61.7
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 9.7e-138 494.2 389 67.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.8e-136 490.0 347 69.5
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.4e-135 485.7 344 68.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 7.7e-135 484.6 345 67.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.0e-134 484.2 346 68.2
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.3e-134 483.8 397 62.2
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.7e-134 483.4 418 59.3
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.9e-134 482.6 346 67.3
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 5.0e-134 481.9 346 66.5
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.9e-133 479.9 376 62.8
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 2.5e-133 479.6 346 67.3
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 2.5e-133 479.6 368 65.8
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 3.2e-133 479.2 412 60.0
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 4.2e-133 478.8 361 64.3
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.4e-133 477.6 347 67.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-132 476.9 346 66.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 4.7e-132 475.3 351 68.9
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.8e-131 473.4 344 65.4
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.0e-130 469.9 327 70.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.4e-130 468.8 346 66.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 7.4e-130 468.0 347 65.7
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.3e-129 467.2 346 66.2
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.3e-129 467.2 351 67.0
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.8e-129 465.3 346 64.2
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.8e-129 465.3 331 70.1
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 4.8e-129 465.3 337 67.1
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.2e-129 464.5 346 63.9
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 8.2e-129 464.5 377 62.9
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.1e-128 464.2 346 65.3
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.8e-128 463.4 342 64.3
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.4e-128 463.0 346 65.9
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 4.1e-128 462.2 317 69.4
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 9.1e-128 461.1 346 63.9
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 2.0e-127 459.9 370 63.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 5.9e-127 458.4 335 65.7
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.3e-126 457.2 412 58.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.3e-126 457.2 418 56.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.2e-126 456.4 350 64.0
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.9e-126 456.1 348 64.4
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.1e-125 454.1 336 67.0
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.5e-125 453.0 336 65.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.2e-125 452.6 336 66.7
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.2e-125 452.6 336 66.7
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.2e-124 450.7 355 62.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.1e-124 449.9 330 67.0
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.1e-124 449.9 346 64.7
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.7e-124 449.5 319 68.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 4.7e-124 448.7 319 69.0
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 6.1e-124 448.4 348 63.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.0e-123 447.6 337 65.6
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.0e-123 447.6 346 64.7
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 2.3e-123 446.4 348 64.1
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.3e-123 446.4 393 58.0
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.3e-123 446.4 358 62.3
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.0e-123 446.0 344 62.8
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 5.2e-123 445.3 341 64.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 8.8e-123 444.5 343 63.8
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.0e-122 443.4 406 56.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.0e-122 443.4 397 55.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.6e-122 443.0 322 64.3
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 3.3e-122 442.6 389 57.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 4.4e-122 442.2 344 63.7
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 4.4e-122 442.2 344 63.7
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.3e-121 440.7 337 62.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-121 440.7 344 63.4
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.3e-121 440.7 318 66.7
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-121 439.9 388 58.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 6.3e-121 438.3 407 56.8
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-120 437.2 343 62.1
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.8e-120 436.8 352 63.1
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.1e-120 436.0 346 63.6
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 4.1e-120 435.6 324 66.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-119 434.1 324 66.0
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.2e-119 434.1 339 62.2
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.6e-119 433.7 320 66.6
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.6e-119 433.0 330 64.8
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.6e-119 433.0 330 64.8
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.5e-118 428.3 351 62.7
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 5.5e-117 425.2 330 62.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.9e-109 400.2 345 58.6
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.9e-109 400.2 380 57.6
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 3.2e-109 399.4 327 59.6
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 7.2e-109 398.3 345 57.7
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 6.1e-108 395.2 385 55.1
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-107 394.4 293 66.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 6.8e-107 391.7 276 71.0
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 8.8e-107 391.3 277 69.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.4e-104 384.0 270 68.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.1e-104 382.9 278 68.3
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 4.5e-103 379.0 564 41.1
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.0e-102 377.9 269 67.7
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 7.5e-98 361.7 299 61.2
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.7e-97 360.5 288 63.9
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.3e-93 345.9 317 53.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 5.2e-91 339.0 261 62.8
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 5.8e-90 335.5 320 53.1
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.0e-88 328.6 317 55.2
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 7.8e-87 325.1 334 50.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.3e-86 323.6 353 50.1
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 8.6e-86 321.6 289 58.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.5e-85 318.2 365 46.8
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 9.8e-82 308.1 228 68.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.9e-77 293.9 220 60.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.3e-77 293.1 218 64.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.3e-73 281.2 302 53.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 6.0e-71 272.3 266 54.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 9.6e-69 265.0 203 67.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 5.2e-67 259.2 203 65.0
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.2e-66 258.1 173 69.9
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 6.0e-63 245.7 196 64.3
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.8e-60 236.9 245 51.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 6.7e-46 189.1 232 45.3
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.3e-41 174.9 160 62.5
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.6e-39 167.9 117 61.5
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.5e-39 166.8 145 58.6
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 8.7e-38 162.2 304 34.5
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.2e-33 147.5 278 34.2
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 3.5e-31 140.2 76 85.5
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.3e-28 131.7 90 64.4
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.8e-27 127.9 304 30.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 6.7e-22 109.4 103 48.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 4.2e-16 90.1 89 49.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 3.6e-15 87.0 74 62.2
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.0e-13 81.3 75 56.0
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 5.3e-11 73.2 187 27.3


User provided reference genes

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