Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 3.6e-191 671.4 338 100.0
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.0e-121 439.1 314 70.1
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 3.9e-108 395.6 311 64.3
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.5e-107 392.9 275 71.3
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 7.1e-102 374.8 288 62.2
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-101 374.0 266 66.2
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.7e-101 372.9 267 65.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.3e-100 369.8 288 59.7
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 5.6e-99 365.2 266 66.5
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.2e-98 364.0 274 63.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.6e-98 363.6 285 58.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.8e-98 362.8 289 60.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.8e-98 362.8 320 57.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.7e-98 362.1 275 61.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 6.2e-98 361.7 313 57.2
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 2.3e-97 359.8 276 60.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 5.2e-97 358.6 264 62.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 5.2e-97 358.6 269 62.5
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 5.2e-97 358.6 312 59.9
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.2e-96 357.5 287 58.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 3.4e-96 355.9 276 60.1
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 3.4e-96 355.9 333 56.2
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.8e-96 355.1 273 60.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.7e-95 353.6 280 59.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.8e-95 352.4 305 58.0
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 4.9e-95 352.1 276 59.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 6.4e-95 351.7 265 61.9
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 8.4e-95 351.3 273 61.9
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.4e-94 350.5 278 60.1
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.9e-94 350.1 269 60.6
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.4e-94 349.7 266 62.8
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.4e-94 349.7 276 60.9
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.4e-94 349.7 276 61.2
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 3.2e-94 349.4 276 58.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.1e-94 348.2 277 61.7
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.1e-94 348.2 277 61.7
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.2e-93 347.4 315 55.2
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.2e-93 347.4 308 56.2
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.6e-93 347.1 306 58.2
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.7e-93 346.3 311 57.6
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.7e-93 346.3 276 59.8
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 5.1e-92 342.0 268 60.8
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 6.6e-92 341.7 275 61.1
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.5e-91 339.7 264 60.6
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 4.3e-91 339.0 264 60.6
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 4.3e-91 339.0 307 55.4
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.3e-91 339.0 263 62.4
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.6e-91 338.6 266 60.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 7.3e-91 338.2 264 59.1
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 7.3e-91 338.2 309 55.3
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 9.6e-91 337.8 277 57.8
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.8e-90 336.3 282 57.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.8e-90 336.3 264 60.2
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.8e-90 336.3 276 58.7
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 4.7e-90 335.5 266 61.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 6.2e-90 335.1 277 58.8
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 8.1e-90 334.7 271 57.6
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.2e-88 330.9 278 57.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.6e-88 329.7 269 59.5
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 7.6e-88 328.2 297 53.5
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 7.6e-88 328.2 274 56.6
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.7e-87 327.0 290 57.2
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.2e-87 326.6 270 58.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 3.8e-87 325.9 278 57.9
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.4e-86 323.9 263 57.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.2e-85 320.9 321 53.6
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.7e-85 319.7 314 52.2
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 4.6e-85 318.9 320 53.8
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.3e-83 312.4 301 52.8
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.8e-82 309.7 309 52.4
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.6e-82 309.3 283 54.4
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-81 307.8 280 56.4
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.1e-81 307.8 274 56.6
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.1e-81 307.8 271 53.5
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.4e-81 307.4 294 48.3
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.8e-81 307.0 274 56.6
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 5.3e-81 305.4 273 56.4
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 5.3e-81 305.4 268 54.9
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.9e-81 305.1 276 49.6
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.9e-81 305.1 303 54.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.2e-80 304.3 264 54.9
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.2e-80 304.3 275 53.1
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.2e-80 304.3 284 49.6
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.5e-80 303.9 284 52.1
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.0e-80 303.5 294 47.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.4e-80 302.8 280 55.4
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.3e-79 300.8 273 56.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.7e-79 300.4 313 51.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.9e-79 299.7 275 55.6
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 8.4e-79 298.1 269 55.8
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.4e-78 297.4 266 54.9
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.4e-78 297.4 266 54.9
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.9e-78 297.0 298 51.7
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.2e-78 296.2 268 55.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 3.5e-77 292.7 295 46.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 7.9e-77 291.6 269 53.2
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.0e-76 291.2 289 49.5
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.3e-74 284.3 295 45.8
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.6e-74 283.9 347 46.4
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.6e-74 283.9 301 48.8
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.8e-73 280.4 267 53.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-72 277.7 284 50.0
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.5e-72 277.3 290 48.6
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.5e-72 277.3 234 61.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.8e-71 272.7 302 46.0
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.1e-70 271.2 265 49.4
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.9e-70 270.4 299 45.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.2e-70 269.6 266 50.4
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.6e-69 265.8 263 46.4
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.9e-69 265.0 272 48.2
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.0e-68 264.6 271 48.7
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.8e-68 263.8 269 50.2
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 3.0e-68 263.1 198 63.1
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.9e-67 260.4 309 42.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-65 254.6 201 61.2
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-65 254.6 201 61.2
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.4e-65 254.2 197 62.4
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.9e-63 246.5 267 45.3
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-62 244.6 270 47.4
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 3.9e-60 236.1 289 45.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.1e-60 235.7 236 48.7
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.5e-59 234.2 279 42.7
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.7e-59 232.3 264 44.7
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.3e-58 231.1 280 45.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 4.8e-58 229.2 312 39.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 5.3e-57 225.7 218 54.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.2e-54 216.1 303 40.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 7.9e-53 211.8 299 38.5
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.7e-51 205.7 305 37.7
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 7.4e-51 205.3 264 40.9
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.7e-50 204.1 177 57.1
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.3e-49 199.1 261 39.5
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 6.9e-49 198.7 171 55.0
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.1e-45 185.7 265 37.7
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-43 181.0 255 41.6
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.4e-43 179.5 276 35.5
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.3e-27 126.7 206 35.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 5.7e-27 125.9 98 62.2
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 6.8e-20 102.4 77 58.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.5e-19 101.3 126 38.1
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.5e-19 99.0 77 62.3
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.5e-19 99.0 77 62.3
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.4e-17 94.7 204 27.9
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 3.5e-16 90.1 89 41.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 3.5e-16 90.1 261 26.8
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.7e-15 87.8 295 25.8
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.5e-14 84.7 263 26.2
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.9e-14 84.3 65 56.9
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.6e-13 81.3 127 37.8


User provided reference genes

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