Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 6.0e-49 197.2 101 100.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.0e-11 73.6 103 49.5
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 2.2e-11 72.4 101 44.6
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 6.5e-11 70.9 102 46.1
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 2.5e-10 68.9 88 48.9
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 9.4e-10 67.0 98 42.9
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.2e-09 66.6 95 46.3
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.2e-09 66.6 99 47.5
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 2.1e-09 65.9 98 44.9
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 2.1e-09 65.9 108 38.9
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.7e-09 65.5 95 44.2
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 2.7e-09 65.5 101 41.6
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.7e-09 65.5 98 42.9
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 3.6e-09 65.1 94 43.6
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 3.6e-09 65.1 101 46.5
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 4.7e-09 64.7 90 48.9
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 4.7e-09 64.7 98 46.9
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 6.1e-09 64.3 99 40.4
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 6.1e-09 64.3 99 44.4
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.1e-09 64.3 98 42.9
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 6.1e-09 64.3 89 47.2
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 8.0e-09 63.9 63 54.0
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 1.0e-08 63.5 94 42.6
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.0e-08 63.5 99 40.4
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 1.8e-08 62.8 33 84.8
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.8e-08 62.8 96 38.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.8e-08 62.8 102 44.1
Oeu011717.2 Olea europaea HOM05D004965 ORTHO05D004401 1.8e-08 62.8 85 45.9
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.8e-08 62.8 98 38.8
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.8e-08 62.8 108 38.0
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 2.3e-08 62.4 102 45.1
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.3e-08 62.4 97 43.3
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 2.3e-08 62.4 100 37.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.3e-08 62.4 99 39.4
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.0e-08 62.0 101 44.6
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 3.0e-08 62.0 100 46.0
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 4.0e-08 61.6 101 40.6
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.0e-08 61.6 100 38.0
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.0e-08 61.6 100 39.0
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 4.0e-08 61.6 92 44.6
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 4.0e-08 61.6 105 42.9
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 5.2e-08 61.2 33 81.8
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 5.2e-08 61.2 100 39.0
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 5.2e-08 61.2 102 44.1
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 6.7e-08 60.8 117 40.2
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.7e-08 60.8 89 40.4
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.7e-08 60.8 104 40.4
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 8.8e-08 60.5 104 41.3
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 8.8e-08 60.5 88 42.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 8.8e-08 60.5 106 42.5
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 8.8e-08 60.5 72 47.2
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.8e-08 60.5 102 43.1
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 8.8e-08 60.5 102 43.1
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 8.8e-08 60.5 98 40.8
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.1e-07 60.1 100 38.0
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.1e-07 60.1 32 81.2
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 1.5e-07 59.7 57 52.6
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.5e-07 59.7 100 39.0
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.5e-07 59.7 45 68.9
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.5e-07 59.7 109 39.4
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-07 59.7 103 40.8
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.5e-07 59.7 31 87.1
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.0e-07 59.3 98 43.9
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.0e-07 59.3 108 37.0
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 2.6e-07 58.9 106 40.6
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 3.3e-07 58.5 97 36.1
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 3.3e-07 58.5 108 38.0
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.3e-07 58.5 103 42.7
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.3e-07 58.5 88 42.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.4e-07 58.2 88 40.9
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 4.4e-07 58.2 101 43.6
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 5.7e-07 57.8 31 80.6
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 7.5e-07 57.4 101 39.6
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 7.5e-07 57.4 30 83.3
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.7e-07 57.0 100 37.0
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.3e-06 56.6 31 80.6
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.3e-06 56.6 33 72.7
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.3e-06 56.6 105 41.9
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.7e-06 56.2 91 41.8
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 2.2e-06 55.8 106 33.0
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.2e-06 55.8 100 39.0
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 2.2e-06 55.8 99 39.4
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 2.2e-06 55.8 89 38.2
TWI36G1686 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.2e-06 55.8 106 41.5
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.8e-06 55.5 89 38.2
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.8e-06 55.5 89 38.2
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.8e-06 55.5 33 72.7
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.7e-06 55.1 103 40.8
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 4.8e-06 54.7 97 40.2
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 6.3e-06 54.3 103 40.8
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 6.3e-06 54.3 99 40.4


User provided reference genes

Program Settings