Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.1e-99 366.7 187 100.0
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 4.5e-66 255.0 187 75.4
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 4.5e-42 175.3 187 56.7
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.5e-37 160.2 210 53.8
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 5.4e-35 151.8 211 50.7
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-34 149.1 199 52.3
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 7.3e-32 141.4 213 48.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 7.3e-32 141.4 187 49.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 9.5e-32 141.0 213 48.8
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.2e-31 140.6 219 49.3
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.6e-31 140.2 209 50.2
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 8.9e-30 134.4 189 50.3
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.9e-30 134.4 189 50.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.0e-29 133.3 226 44.7
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 3.4e-29 132.5 189 47.6
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 5.8e-29 131.7 218 45.4
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 9.8e-29 131.0 211 46.4
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.9e-28 129.4 214 46.3
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 3.7e-28 129.0 223 45.7
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.7e-28 129.0 217 44.7
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.4e-28 128.3 199 47.2
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.1e-27 127.5 238 43.7
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.1e-27 125.6 228 43.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 4.1e-27 125.6 199 48.7
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 4.1e-27 125.6 199 48.7
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.4e-27 125.2 211 47.4
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 7.0e-27 124.8 188 46.8
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-26 124.0 193 47.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 4.6e-26 122.1 219 44.3
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 4.6e-26 122.1 211 43.1
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 7.8e-26 121.3 223 44.8
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.8e-26 121.3 196 44.9
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.3e-25 120.6 203 45.8
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-25 120.6 188 46.8
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.7e-25 120.2 214 39.7
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.7e-25 120.2 188 44.1
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 1.7e-25 120.2 215 42.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.3e-25 119.8 226 43.8
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 3.9e-25 119.0 225 42.7
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.0e-25 118.6 218 41.3
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 6.6e-25 118.2 214 39.3
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 6.6e-25 118.2 208 46.2
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.6e-25 118.2 218 41.3
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.6e-25 117.9 226 41.6
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.1e-24 117.5 229 41.5
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.1e-24 117.5 218 43.1
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.5e-24 117.1 227 40.1
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.5e-24 117.1 197 42.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.5e-24 116.3 223 42.6
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 5.6e-24 115.2 193 45.6
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 5.6e-24 115.2 203 42.4
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.2e-23 114.0 211 40.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.6e-23 113.6 187 43.9
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.8e-23 112.8 190 46.3
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.8e-23 112.8 230 40.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 2.8e-23 112.8 217 42.9
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 4.7e-23 112.1 220 42.7
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.1e-23 111.3 138 55.8
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 8.1e-23 111.3 213 41.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 8.1e-23 111.3 209 40.7
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 8.1e-23 111.3 209 43.1
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-22 110.9 187 43.3
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.4e-22 110.5 194 44.8
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.8e-22 110.2 217 42.9
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 3.1e-22 109.4 201 41.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.1e-22 109.4 187 39.6
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 4.0e-22 109.0 223 40.4
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 6.8e-22 108.2 214 40.7
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.2e-21 107.5 190 43.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.2e-21 107.5 137 54.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.4e-21 105.9 220 40.9
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 3.4e-21 105.9 206 40.3
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.4e-21 105.9 224 40.6
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 4.4e-21 105.5 217 41.5
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.8e-21 105.1 196 40.8
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.7e-20 103.6 204 39.7
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.9e-20 102.1 215 40.5
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.9e-20 102.1 213 39.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 4.9e-20 102.1 211 39.8
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.4e-19 100.5 224 36.6
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.4e-19 99.8 214 39.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.2e-19 99.4 221 35.7
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.2e-19 99.4 196 39.3
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 5.4e-19 98.6 191 40.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.4e-19 98.6 214 40.2
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.2e-19 97.8 193 39.4
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 9.2e-19 97.8 214 40.2
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.1e-18 96.7 201 38.8
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.1e-18 96.7 222 39.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.5e-18 95.9 201 39.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 4.6e-18 95.5 198 39.4
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 7.8e-18 94.7 189 40.2
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.0e-17 94.4 128 49.2
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.7e-17 93.6 200 44.0
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.3e-17 93.2 134 49.3
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 3.0e-17 92.8 239 39.3
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.9e-17 92.4 189 38.1
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.1e-17 92.0 191 39.8
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 8.6e-17 91.3 162 42.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.1e-16 90.9 197 36.0
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-16 90.5 185 38.9
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.9e-16 90.1 189 38.6
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.9e-16 90.1 224 36.2
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.3e-16 89.4 191 38.7
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 7.3e-16 88.2 197 40.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.2e-15 87.4 236 36.0
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.1e-15 86.7 187 37.4
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.8e-15 86.3 174 41.4
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.8e-15 86.3 172 39.5
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 4.7e-15 85.5 194 35.6
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 6.2e-15 85.1 100 54.0
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.8e-14 83.6 112 49.1
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 3.1e-14 82.8 162 41.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 4.0e-14 82.4 128 43.8
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 5.2e-14 82.0 144 47.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 6.8e-14 81.6 145 40.7
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.8e-14 81.6 143 40.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 8.9e-14 81.3 229 35.8
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.9e-14 81.3 114 44.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.5e-13 80.5 108 47.2
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-13 80.1 131 42.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.6e-13 79.7 110 46.4
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 2.6e-13 79.7 144 43.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 2.6e-13 79.7 144 43.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 2.6e-13 79.7 144 43.8
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.4e-13 79.3 145 40.7
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 5.8e-13 78.6 108 45.4
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 7.6e-13 78.2 144 43.8
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 7.6e-13 78.2 144 43.8
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 9.9e-13 77.8 202 32.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.3e-12 77.4 223 30.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.3e-12 77.4 131 42.0
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.3e-12 77.4 88 48.9
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.7e-12 77.0 75 60.0
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.7e-12 77.0 202 33.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 2.2e-12 76.6 205 34.1
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.2e-12 76.6 145 40.0
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.2e-12 76.6 108 42.6
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.7e-12 75.9 128 43.8
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 4.9e-12 75.5 145 40.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 4.9e-12 75.5 145 40.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 6.4e-12 75.1 147 41.5
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.4e-12 75.1 109 45.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.4e-12 75.1 153 39.9
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 8.4e-12 74.7 245 33.1
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-11 73.6 109 45.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-11 73.6 109 45.0
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.9e-11 73.6 109 45.0
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.9e-11 73.6 109 45.0
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-11 73.6 197 30.5
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 4.1e-11 72.4 109 45.0
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.1e-11 72.4 87 47.1
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.4e-11 72.0 203 34.5
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 5.4e-11 72.0 170 36.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 7.1e-11 71.6 62 56.5
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.6e-10 70.5 215 30.7
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.6e-10 70.5 45 77.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.6e-10 70.5 183 35.0
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 2.7e-10 69.7 47 70.2
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.8e-10 68.2 209 33.5
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.3e-09 67.4 124 38.7
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.5e-08 63.9 198 32.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.5e-08 63.9 177 34.5
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.3e-08 62.8 141 39.0
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 7.3e-08 61.6 181 32.6
SEGI_07957 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 1.6e-07 60.5 58 55.2
SEGI_16187 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 1.6e-07 60.5 58 55.2
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.8e-07 59.7 105 39.0
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.7e-07 58.9 38 73.7
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 8.1e-07 58.2 47 63.8
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 8.1e-07 58.2 51 51.0
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 1.8e-06 57.0 38 68.4
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 1.8e-06 57.0 144 38.2
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 4.0e-06 55.8 74 40.5
CDE04G1089 Ceratophyllum demersum HOM05D001536 ORTHO05D001442 4.0e-06 55.8 62 46.8
Zm00001eb050120 Zea mays HOM05D004032 ORTHO05D004462 4.0e-06 55.8 50 62.0
Dinv10677 Davidia involucrata HOM05D001536 ORTHO05D001442 5.2e-06 55.5 40 65.0
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 6.8e-06 55.1 61 49.2
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 8.9e-06 54.7 188 28.2


User provided reference genes

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