Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.7e-171 605.9 313 100.0
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 3.8e-134 481.9 317 80.8
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.9e-130 469.5 317 77.6
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 8.2e-121 437.6 326 73.6
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 1.1e-120 437.2 320 72.2
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 2.1e-108 396.4 268 75.7
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 2.7e-108 396.0 265 76.2
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.8e-107 393.3 264 77.7
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 3.0e-107 392.5 264 77.7
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 6.7e-107 391.3 311 67.2
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 3.3e-106 389.0 311 68.2
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.3e-106 389.0 272 76.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 4.4e-106 388.7 313 68.7
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 4.4e-106 388.7 313 68.7
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.4e-106 388.7 268 75.0
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 7.5e-106 387.9 311 66.9
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.5e-106 387.9 268 74.6
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 9.7e-106 387.5 267 74.5
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.3e-105 387.1 267 73.8
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.7e-105 386.7 313 66.1
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 2.2e-105 386.3 267 74.5
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 6.3e-105 384.8 267 74.5
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 6.3e-105 384.8 326 66.9
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.1e-104 384.0 314 66.9
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.8e-104 383.3 324 64.5
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.8e-104 383.3 267 73.8
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 4.1e-104 382.1 272 71.3
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 5.3e-104 381.7 268 73.9
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 5.3e-104 381.7 267 73.4
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 5.3e-104 381.7 268 73.9
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 7.0e-104 381.3 266 75.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-103 380.6 267 73.0
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.2e-103 380.6 321 67.0
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 2.0e-103 379.8 288 69.8
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.7e-103 377.9 320 67.5
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.0e-102 377.5 262 76.0
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.0e-102 377.5 267 73.4
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.2e-102 376.3 264 73.5
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.9e-102 375.9 264 74.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 6.5e-102 374.8 270 73.3
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.1e-101 374.0 331 65.0
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.9e-101 373.2 327 65.4
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 3.2e-101 372.5 321 65.7
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 7.2e-101 371.3 264 74.2
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.1e-100 369.8 333 63.4
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 4.7e-100 368.6 324 66.0
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 6.1e-100 368.2 270 71.5
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 8.0e-100 367.9 266 71.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.4e-99 367.1 321 65.1
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.8e-99 366.7 326 65.0
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.8e-99 366.7 271 70.5
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 2.3e-99 366.3 321 65.1
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 2.6e-98 362.8 316 64.6
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 5.7e-98 361.7 314 65.9
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 9.8e-98 360.9 321 62.9
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.8e-97 359.4 312 63.1
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 3.7e-97 359.0 270 69.3
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.8e-97 358.6 264 70.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 6.3e-97 358.2 317 64.4
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.4e-96 357.1 312 64.1
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.4e-96 356.3 320 61.2
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 4.1e-96 355.5 242 73.6
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.1e-96 355.5 312 63.8
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.1e-96 355.5 329 62.0
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-95 354.0 252 71.0
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.2e-95 354.0 308 62.7
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.2e-95 354.0 275 70.9
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.0e-95 353.2 316 65.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.0e-95 353.2 264 72.0
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 7.7e-95 351.3 323 63.2
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-94 350.5 290 65.5
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.3e-94 350.5 290 65.5
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 2.3e-94 349.7 342 57.3
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.9e-94 349.4 327 61.5
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 2.9e-94 349.4 269 68.0
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 2.9e-94 349.4 324 61.7
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 8.6e-94 347.8 327 61.2
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 8.6e-94 347.8 234 77.4
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 8.6e-94 347.8 317 63.4
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 1.5e-93 347.1 317 63.1
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 5.5e-93 345.1 294 63.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 7.2e-93 344.7 266 69.2
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 1.6e-92 343.6 318 60.7
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 8.0e-92 341.3 322 62.7
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.6e-90 336.3 326 60.1
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 7.5e-90 334.7 323 58.5
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 9.8e-90 334.3 287 64.5
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.3e-89 334.0 312 60.6
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.2e-89 333.2 269 68.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 2.2e-89 333.2 273 64.8
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-88 330.9 264 66.3
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 1.4e-88 330.5 309 60.5
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 2.7e-87 326.2 234 71.4
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.3e-86 323.9 312 59.3
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 2.1e-84 316.6 296 60.1
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.6e-84 315.8 328 57.3
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 8.0e-84 314.7 330 56.7
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.0e-82 310.1 234 70.5
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 9.8e-82 307.8 303 56.1
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.2e-81 306.6 240 68.3
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 5.4e-80 302.0 323 56.7
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 9.2e-80 301.2 265 62.3
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.0e-78 296.2 247 64.0
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 3.0e-78 296.2 208 72.6
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 3.9e-78 295.8 284 59.2
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 1.1e-72 277.7 267 58.1
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 7.0e-72 275.0 315 54.3
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.3e-69 266.2 221 63.3
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.3e-65 254.2 170 74.1
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.7e-63 246.5 155 78.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 6.6e-62 241.9 182 69.8
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.1e-51 208.0 273 45.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 7.1e-48 195.3 226 52.2
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.7e-41 174.1 150 62.0
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.2e-36 155.6 264 40.5
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 6.9e-35 152.1 191 48.2
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 2.7e-23 113.6 81 69.1
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.3e-20 104.8 112 53.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.4e-19 101.3 87 60.9
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.2e-18 98.2 87 58.6
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 2.0e-18 97.4 87 59.8
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 4.7e-07 59.7 66 48.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.8e-06 57.8 66 48.5


User provided reference genes

Program Settings