Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 1.1e-78 296.6 155 100.0
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 6.9e-44 181.0 136 66.9
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 7.8e-40 167.5 131 69.5
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 3.2e-33 145.6 146 56.2
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 6.0e-32 141.4 121 61.2
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.0e-31 140.6 103 69.9
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.1e-30 137.1 134 58.2
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 3.1e-28 129.0 131 59.5
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 4.5e-27 125.2 129 56.6
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 4.5e-27 125.2 129 56.6
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 1.1e-25 120.6 125 52.8
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-24 117.1 134 53.0
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.6e-24 116.7 133 51.9
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 7.4e-22 107.8 126 48.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 6.2e-21 104.8 128 48.4
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 8.2e-21 104.4 128 49.2
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.1e-20 104.0 123 52.0
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.8e-20 103.2 133 48.9
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 5.3e-20 101.7 124 46.0
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 5.3e-20 101.7 127 49.6
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.3e-20 101.7 125 47.2
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 6.9e-20 101.3 135 48.9
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 6.9e-20 101.3 135 48.9
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 9.0e-20 100.9 128 47.7
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 9.0e-20 100.9 131 42.7
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.2e-19 100.5 127 49.6
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-19 100.5 133 48.9
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.5e-19 100.1 128 45.3
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 2.0e-19 99.8 130 44.6
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.5e-19 98.6 128 45.3
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 4.5e-19 98.6 130 48.5
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.0e-18 97.4 133 48.1
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.2e-18 96.3 134 47.8
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 2.9e-18 95.9 129 48.8
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.5e-18 94.7 134 45.5
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.9e-17 93.2 134 43.3
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.9e-17 93.2 134 43.3
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 3.2e-17 92.4 119 49.6
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.2e-17 92.0 125 44.8
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 4.2e-17 92.0 132 44.7
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 4.2e-17 92.0 128 47.7
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.5e-17 91.7 134 42.5
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.2e-16 90.5 129 45.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 2.7e-16 89.4 140 41.4
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 4.6e-16 88.6 119 47.1
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.0e-15 87.4 127 42.5
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 1.8e-15 86.7 126 44.4
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.9e-15 85.5 122 41.8
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 6.7e-15 84.7 131 44.3
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 6.7e-15 84.7 131 44.3
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.7e-15 84.7 139 41.7
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 1.9e-14 83.2 129 43.4
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.9e-14 83.2 126 40.5
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 2.5e-14 82.8 130 43.8
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.5e-14 82.8 124 40.3
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 3.3e-14 82.4 124 41.9
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 4.3e-14 82.0 122 44.3
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.7e-14 81.6 129 42.6
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.7e-14 81.6 124 44.4
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 5.7e-14 81.6 124 46.8
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 9.7e-14 80.9 122 43.4
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.3e-13 80.5 122 42.6
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 1.6e-13 80.1 134 44.0
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 1.6e-13 80.1 134 44.0
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 2.2e-13 79.7 132 40.2
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.2e-13 79.7 125 39.2
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.2e-13 79.7 122 42.6
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 3.7e-13 79.0 122 39.3
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.8e-13 78.6 131 43.5
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.8e-13 78.6 124 41.1
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 8.2e-13 77.8 124 41.1
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.2e-13 77.8 129 43.4
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.4e-12 77.0 126 46.8
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.8e-12 76.6 126 46.8
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.8e-12 76.6 126 41.3
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.4e-12 76.3 122 41.8
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 5.3e-12 75.1 125 39.2
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 9.0e-12 74.3 140 39.3
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.2e-11 73.9 124 38.7
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 2.6e-11 72.8 125 42.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.4e-11 72.4 125 43.2
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.9e-11 71.6 132 40.9
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 7.7e-11 71.2 133 40.6
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.7e-10 70.1 121 36.4
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 2.2e-10 69.7 134 38.8
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 5.0e-10 68.6 136 39.0
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 6.5e-10 68.2 127 40.9
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 8.5e-10 67.8 131 39.7
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 8.5e-10 67.8 127 44.9
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-09 67.4 134 38.8
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 1.1e-09 67.4 125 41.6
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.4e-09 67.0 120 42.5
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.9e-09 66.6 131 37.4
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.9e-09 66.6 129 34.1
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 1.9e-09 66.6 125 39.2
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.9e-09 66.6 131 40.5
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-09 66.2 129 34.1
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.5e-09 66.2 131 40.5
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 4.2e-09 65.5 129 34.1
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.2e-09 65.5 129 34.1
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.2e-09 65.5 129 34.1
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 5.5e-09 65.1 118 33.9
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 7.2e-09 64.7 126 40.5
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.2e-09 64.7 129 33.3
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 9.4e-09 64.3 133 36.8
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.4e-09 64.3 129 34.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.2e-08 63.9 128 34.4
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.6e-08 63.5 135 34.8
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.6e-08 63.5 135 34.8
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 2.1e-08 63.2 135 37.0
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 3.6e-08 62.4 139 32.4
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 3.6e-08 62.4 139 32.4
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.6e-08 62.4 139 32.4
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.6e-08 62.4 139 32.4
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.6e-08 62.0 124 31.5
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.6e-08 62.0 139 32.4
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 6.1e-08 61.6 117 43.6
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.1e-08 61.6 136 32.4
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 1.0e-07 60.8 133 33.8
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.0e-07 60.8 125 42.4
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.0e-07 60.8 136 30.9
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-07 60.1 129 34.1
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 2.3e-07 59.7 137 30.7
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 2.3e-07 59.7 118 42.4
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.0e-07 59.3 129 31.0
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 6.7e-07 58.2 122 29.5
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.1e-06 57.4 134 34.3
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 1.1e-06 57.4 122 36.9
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 1.5e-06 57.0 123 40.7
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 4.3e-06 55.5 124 34.7
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 4.3e-06 55.5 124 34.7
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 5.7e-06 55.1 122 39.3
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 7.4e-06 54.7 137 29.2
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 7.4e-06 54.7 114 32.5
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.7e-06 54.3 137 28.5


User provided reference genes

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