Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.9e-140 501.9 253 100.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.3e-84 317.0 250 66.4
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.0e-77 293.1 238 63.9
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.1e-75 287.3 207 69.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.5e-75 286.2 228 65.4
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 6.1e-74 281.6 178 78.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 7.9e-74 281.2 251 59.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 8.8e-73 277.7 242 62.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 5.7e-72 275.0 251 58.2
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.1e-70 269.2 253 60.9
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.0e-69 266.5 232 63.4
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.5e-69 265.4 247 55.9
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.5e-69 265.4 251 58.6
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 4.5e-69 265.4 242 57.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.0e-68 264.2 220 60.9
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.7e-68 263.5 236 58.5
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.2e-68 263.1 240 59.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.2e-68 263.1 242 57.4
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 5.0e-68 261.9 251 55.4
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-67 260.8 247 57.5
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-67 260.8 167 75.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-67 260.8 210 64.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.5e-67 260.4 253 56.1
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.5e-67 259.6 247 58.3
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.2e-67 259.2 210 63.3
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 7.2e-67 258.1 229 60.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.2e-66 257.3 209 62.2
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.2e-66 257.3 244 57.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.2e-66 257.3 251 58.2
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.1e-66 256.5 239 56.9
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.1e-66 256.5 157 79.6
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.6e-66 255.8 231 58.9
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 6.1e-66 255.0 251 57.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.0e-65 254.2 224 59.8
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.0e-65 254.2 252 57.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-65 253.8 239 56.1
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.4e-65 253.8 216 60.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 4.0e-65 252.3 243 56.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 5.2e-65 251.9 234 57.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.2e-64 250.8 205 63.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.0e-64 250.0 229 58.1
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.4e-64 248.8 213 62.0
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.4e-64 248.8 216 61.1
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.3e-63 247.3 180 69.4
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.3e-63 247.3 238 52.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.3e-63 247.3 213 62.4
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.3e-63 247.3 185 67.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.7e-63 246.9 248 57.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.2e-63 246.5 274 51.5
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.7e-63 245.7 235 57.0
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.7e-63 245.7 222 57.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 3.7e-63 245.7 222 57.7
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 3.7e-63 245.7 188 64.9
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 4.8e-63 245.4 237 57.8
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 8.2e-63 244.6 153 77.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.1e-62 244.2 238 53.4
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-62 244.2 218 61.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.4e-62 243.8 247 54.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.4e-62 243.0 209 60.3
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.1e-62 242.7 183 66.1
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.1e-62 242.7 240 57.9
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-62 241.9 155 75.5
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 7.0e-62 241.5 200 60.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.1e-62 241.1 178 66.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-61 240.7 240 54.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.7e-61 239.6 210 61.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 3.5e-61 239.2 242 55.4
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-61 239.2 161 73.9
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.5e-61 239.2 216 59.3
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.5e-61 238.8 194 64.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 5.9e-61 238.4 253 51.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 5.9e-61 238.4 253 51.0
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.9e-61 238.4 251 53.8
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.0e-60 237.7 280 47.9
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.0e-60 237.7 205 58.0
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.0e-60 237.7 212 58.0
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.2e-60 236.5 227 52.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.8e-60 235.7 251 54.2
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.0e-60 235.3 183 63.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.0e-60 235.3 183 63.9
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.0e-60 235.3 155 74.8
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 6.5e-60 235.0 145 75.9
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 6.5e-60 235.0 180 66.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.5e-59 233.8 186 63.4
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.5e-59 233.8 186 63.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.5e-59 233.8 155 73.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.5e-59 233.8 190 62.6
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.9e-59 233.4 186 63.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.9e-59 233.4 188 60.6
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.2e-59 232.3 194 63.4
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 5.5e-59 231.9 251 49.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 7.2e-59 231.5 251 50.6
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.2e-59 231.5 212 57.5
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 9.4e-59 231.1 185 64.9
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.2e-58 230.7 179 65.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.2e-58 230.7 218 58.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.2e-58 230.7 196 60.2
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.2e-58 230.7 143 77.6
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.6e-58 229.2 193 59.6
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 4.7e-58 228.8 212 56.6
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 6.1e-58 228.4 152 70.4
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 8.0e-58 228.0 219 55.7
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 8.0e-58 228.0 239 53.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.8e-57 226.9 199 63.8
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.3e-57 226.5 186 65.1
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.0e-57 226.1 247 53.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 3.0e-57 226.1 243 52.7
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.0e-57 225.7 189 61.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 4.0e-57 225.7 148 73.6
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 5.2e-57 225.3 179 67.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 6.8e-57 224.9 164 67.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 8.8e-57 224.6 229 52.8
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.6e-56 223.0 200 55.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.4e-56 222.6 231 52.4
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.4e-54 217.2 199 59.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-54 216.9 180 62.2
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.4e-54 216.5 133 75.2
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.1e-54 216.1 175 61.1
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.7e-53 213.0 200 54.5
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.5e-53 212.2 170 60.0
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.7e-52 210.3 181 56.9
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.9e-51 206.8 148 65.5
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 9.8e-48 194.5 202 53.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 6.3e-47 191.8 122 71.3
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.1e-46 189.1 149 61.7
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.1e-46 189.1 249 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.9e-45 185.3 150 56.7
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.3e-44 183.3 217 49.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.5e-43 180.6 198 53.5
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.9e-43 180.3 186 48.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.5e-43 179.9 163 55.8
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.6e-43 178.7 139 56.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.4e-41 174.1 190 50.5
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.7e-39 167.2 138 61.6
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.9e-39 166.4 146 61.6
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 6.0e-37 158.7 255 42.7
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-34 151.0 183 47.0
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.8e-32 142.1 150 51.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 5.8e-32 142.1 127 57.5
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.5e-32 141.7 143 54.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 9.8e-32 141.4 205 42.0
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.0e-28 129.8 156 49.4
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-22 111.3 144 45.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.1e-21 107.1 79 62.0
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.8e-21 105.1 109 54.1
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.3e-19 99.4 147 36.7
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 8.9e-17 91.7 249 29.7
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.0e-12 78.2 131 29.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.7e-12 77.4 143 34.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-10 71.2 118 33.1
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.8e-10 70.1 162 30.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.2e-10 68.9 91 47.3
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.1e-09 66.6 147 26.5
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 5.2e-09 65.9 112 32.1
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.5e-08 64.3 94 39.4
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.6e-08 62.0 79 53.2
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 8.4e-07 58.5 56 53.6


User provided reference genes

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