Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 2135.5 1058 100.0
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1754.2 1058 80.5
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1729.1 1058 78.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1578.5 1099 70.7
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1453.7 1056 66.3
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1426.8 1055 64.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1402.5 1063 64.2
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1390.9 1065 64.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1389.4 1056 63.5
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1387.1 1056 63.4
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1383.6 1166 59.3
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1382.9 1061 63.1
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1371.3 1052 62.7
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1350.5 1051 61.7
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1348.2 1050 61.7
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1343.6 1052 62.5
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1337.8 1066 61.5
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1325.5 1059 61.9
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1325.5 1052 61.3
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1317.0 1056 61.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1316.2 1049 60.2
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1313.5 1062 59.6
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1313.1 1048 60.9
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1310.4 1051 60.3
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1305.4 1047 60.3
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1302.3 1082 60.9
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1298.5 1052 60.2
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1288.5 1056 60.8
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1287.7 1027 61.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1285.0 1143 57.0
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1284.6 1133 57.2
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1284.2 1048 59.1
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1278.8 1045 59.9
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1275.8 1063 60.2
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1274.6 1049 59.1
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1273.8 1056 60.4
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1273.1 1089 58.4
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1271.9 1053 59.0
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1271.1 1045 59.6
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1268.4 1050 59.2
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1267.3 1055 59.8
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1266.5 1049 58.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1265.4 1053 59.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1265.4 1054 58.0
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1264.2 1077 58.1
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1263.8 1055 59.0
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1259.2 1058 58.9
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1061 58.4
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1065 58.3
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1253.0 1045 58.5
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1252.3 1052 58.4
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1250.7 1058 58.3
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1248.0 1013 60.3
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1241.9 1052 58.1
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1051 57.6
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1086 57.7
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1234.9 1064 58.3
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1234.6 1045 57.4
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1231.9 1051 57.0
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1230.7 1078 56.7
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1229.9 1047 57.3
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1228.0 1047 57.5
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1225.3 1052 57.1
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1224.5 1050 57.2
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1223.4 1174 54.9
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1223.0 1055 56.3
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1219.5 1060 57.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1219.5 1049 57.6
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1219.1 1052 56.9
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1218.8 1052 57.0
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1217.6 1052 57.0
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1216.8 1048 57.1
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1216.4 1062 55.5
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1215.3 1054 56.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1214.1 1063 55.7
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1209.9 1053 56.3
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1209.5 1054 56.5
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1206.8 1054 56.2
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1192.6 1037 56.2
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1188.7 1051 56.1
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1188.7 1070 55.3
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1184.1 1033 57.2
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1093 55.1
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1159.4 1053 55.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1158.3 1054 55.4
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1142.1 1046 54.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 0.0e+00 1141.7 1058 56.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1121.3 1050 53.2
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1089.3 1023 52.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1088.6 1035 53.3
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 5.1e-311 1071.2 850 61.1
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 8.7e-311 1070.5 1054 53.2
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 9.7e-299 1030.4 867 58.0
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.2e-286 988.4 1022 49.2
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.2e-282 976.1 673 72.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.1e-253 879.8 899 51.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.8e-245 852.8 736 58.2
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 8.9e-244 847.8 1057 43.0
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.2e-240 837.4 679 60.2
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 1.3e-239 833.9 707 58.8
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.1e-233 814.3 879 49.3
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 8.2e-197 691.8 507 64.3
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.4e-196 691.0 700 49.4
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 8.2e-189 665.2 835 42.5
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.2e-187 661.4 821 45.2
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 3.2e-185 653.3 723 49.0
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 3.0e-183 646.7 989 37.6
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.3e-181 641.3 550 59.8
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.8e-173 613.6 1052 36.4
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.8e-162 576.6 860 37.6
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 4.2e-161 573.2 523 53.7
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 5.9e-155 552.7 598 48.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 5.9e-147 526.2 488 53.7
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.9e-141 506.5 506 49.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.1e-140 505.4 380 65.0
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-132 478.0 477 52.2
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 3.7e-125 453.8 357 61.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-121 442.2 351 62.7
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 5.4e-116 423.3 860 31.4
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 3.4e-110 404.1 446 47.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 7.6e-110 402.9 344 56.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 7.9e-99 366.3 1126 27.4
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 4.3e-81 307.4 207 67.6
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.7e-75 288.1 258 56.2
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.4e-71 275.0 221 58.4
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.5e-62 245.7 208 55.3
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.4e-60 239.2 292 46.2
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.2e-60 238.0 177 67.2
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.6e-59 234.6 249 49.0
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 7.9e-59 233.4 383 37.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 6.7e-58 230.3 984 24.5
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 5.3e-55 220.7 268 45.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 6.5e-53 213.8 1172 23.4
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.7e-51 208.4 270 42.6
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.0e-50 204.5 322 39.4
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.7e-43 181.8 152 49.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 7.5e-41 173.7 126 68.3
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-38 166.0 211 44.5
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 4.0e-34 151.4 187 42.8
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.2e-32 145.6 328 31.7
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.5e-30 137.9 113 61.1
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 3.8e-29 134.8 99 61.6
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 6.8e-26 124.0 86 69.8
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 6.4e-24 117.5 104 54.8
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 4.1e-23 114.8 99 54.5
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.6e-22 112.8 154 42.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 7.8e-22 110.5 153 44.4
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.3e-21 109.0 72 66.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 3.3e-20 105.1 85 55.3
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 9.2e-15 87.0 78 52.6
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 2.7e-14 85.5 117 40.2
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.9e-13 81.6 122 38.5
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 8.6e-13 80.5 161 29.2
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.1e-12 80.1 70 55.7
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-09 68.9 75 45.3
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 2.1e-06 59.3 45 62.2


User provided reference genes

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