Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 9.6e-94 347.1 205 100.0
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.5e-33 147.1 174 53.4
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.0e-30 136.7 169 55.0
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.8e-26 122.5 172 50.0
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.5e-25 120.6 178 49.4
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.2e-25 119.4 172 49.4
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.8e-23 113.6 170 49.4
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 6.8e-23 111.7 185 47.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 8.3e-21 104.8 158 46.8
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.8e-20 103.6 149 49.7
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.1e-20 102.4 163 49.1
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.8e-18 95.9 160 45.0
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 5.0e-18 95.5 193 40.4
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 8.6e-18 94.7 163 47.9
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.1e-17 94.4 161 44.7
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 4.2e-17 92.4 171 46.8
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 7.2e-17 91.7 182 42.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.5e-17 91.3 167 46.1
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.6e-16 90.5 171 42.1
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.6e-16 90.5 172 40.1
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 1.6e-16 90.5 185 43.8
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.6e-16 90.5 173 39.9
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 2.1e-16 90.1 168 42.3
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.6e-16 89.4 179 39.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.6e-16 89.4 186 39.2
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 3.6e-16 89.4 186 39.2
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 6.1e-16 88.6 188 40.4
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 6.1e-16 88.6 170 45.3
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 6.1e-16 88.6 171 42.7
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 6.1e-16 88.6 156 40.4
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 8.0e-16 88.2 180 41.1
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 8.0e-16 88.2 163 43.6
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 8.0e-16 88.2 180 41.7
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.0e-15 87.8 168 42.9
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 1.8e-15 87.0 170 38.8
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.8e-15 87.0 143 42.7
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.0e-15 86.3 188 41.0
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 4.0e-15 85.9 176 42.6
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 5.2e-15 85.5 151 41.1
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.2e-15 85.5 150 46.0
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 6.8e-15 85.1 169 42.0
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.2e-14 84.3 169 39.6
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.5e-14 84.0 186 39.2
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.5e-14 84.0 186 40.3
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.5e-14 84.0 170 44.7
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.5e-14 84.0 171 42.7
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.0e-14 83.6 164 41.5
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-14 83.2 174 36.2
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.6e-14 83.2 174 36.2
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.6e-14 83.2 188 38.8
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 2.6e-14 83.2 170 35.9
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.4e-14 82.8 159 40.3
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.4e-14 82.8 173 34.7
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 4.4e-14 82.4 183 39.3
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 5.7e-14 82.0 176 40.3
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 5.7e-14 82.0 148 39.9
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 9.8e-14 81.3 168 42.9
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.3e-13 80.9 185 41.1
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-13 80.1 147 38.1
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 3.7e-13 79.3 191 38.2
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 4.9e-13 79.0 150 38.7
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 4.9e-13 79.0 150 38.7
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.9e-13 79.0 163 39.9
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 6.3e-13 78.6 164 36.0
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 6.3e-13 78.6 142 43.0
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 8.3e-13 78.2 176 35.8
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 8.3e-13 78.2 156 42.3
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 8.3e-13 78.2 169 37.3
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-12 77.8 177 35.0
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-12 77.8 177 35.0
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-12 77.8 177 35.0
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-12 77.4 147 37.4
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-12 77.4 150 37.3
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-12 77.4 172 34.9
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.4e-12 77.4 147 37.4
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-12 77.4 150 37.3
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-12 77.0 176 35.2
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 4.1e-12 75.9 167 37.1
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 4.1e-12 75.9 169 30.8
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 5.4e-12 75.5 134 39.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 5.4e-12 75.5 172 33.7
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 5.4e-12 75.5 172 33.7
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 7.0e-12 75.1 177 36.7
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 7.0e-12 75.1 135 40.7
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 7.0e-12 75.1 156 39.7
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-11 74.3 171 35.1
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.2e-11 74.3 174 33.9
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.2e-11 74.3 126 41.3
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.6e-11 73.9 171 33.9
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.6e-11 73.9 170 37.1
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.0e-11 73.6 173 41.0
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.7e-11 73.2 174 38.5
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 3.5e-11 72.8 180 35.0
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 3.5e-11 72.8 148 41.2
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.5e-11 72.4 147 36.7
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.5e-11 72.4 171 38.6
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 5.9e-11 72.0 172 33.7
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 5.9e-11 72.0 169 31.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 5.9e-11 72.0 172 33.7
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 5.9e-11 72.0 169 31.4
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 5.9e-11 72.0 157 36.3
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 5.9e-11 72.0 185 34.6
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 7.8e-11 71.6 156 37.2
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.3e-10 70.9 141 39.0
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.7e-10 70.5 149 38.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-10 70.5 172 32.0
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.7e-10 70.5 172 32.0
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 2.3e-10 70.1 131 39.7
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 2.3e-10 70.1 167 35.3
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.9e-10 69.7 153 36.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 3.8e-10 69.3 152 37.5
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 3.8e-10 69.3 172 30.8
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 5.0e-10 68.9 73 53.4
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 5.0e-10 68.9 160 36.9
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 5.0e-10 68.9 75 56.0
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 6.6e-10 68.6 169 36.1
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.1e-09 67.8 166 36.1
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.1e-09 67.8 150 37.3
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.5e-09 67.4 122 41.8
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.9e-09 67.0 169 35.5
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.9e-09 67.0 119 40.3
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.5e-09 66.6 121 39.7
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.3e-09 66.2 173 37.6
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.3e-09 65.1 128 37.5
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 9.5e-09 64.7 81 46.9
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 9.5e-09 64.7 64 54.7
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 9.5e-09 64.7 143 38.5
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.6e-08 63.9 146 38.4
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.1e-08 63.5 77 46.8
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-08 63.5 173 32.9
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.8e-08 63.2 67 53.7
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 2.8e-08 63.2 155 38.1
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.7e-08 62.4 64 54.7
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.4e-07 60.8 155 34.8
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.8e-07 60.5 87 44.8
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 4.0e-07 59.3 72 47.2
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.5e-06 57.4 122 36.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.5e-06 57.4 150 36.0
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 1.5e-06 57.4 149 38.9
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.7e-06 55.5 168 33.9


User provided reference genes

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