Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.6e-286 988.0 496 100.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 2.5e-233 812.0 497 82.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.6e-227 792.7 498 80.9
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 8.2e-216 753.8 492 78.3
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 6.8e-194 681.0 492 71.3
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.2e-193 680.2 490 70.8
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 2.2e-192 676.0 470 73.0
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 6.3e-192 674.5 467 72.8
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 6.3e-192 674.5 467 72.4
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-191 672.2 469 73.6
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.1e-191 671.8 469 73.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.6e-190 669.8 512 68.2
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 5.0e-189 664.8 466 73.2
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.1e-188 663.7 468 72.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.2e-188 662.1 492 70.1
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.1e-187 659.4 473 70.6
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.1e-187 659.4 467 71.7
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 6.1e-187 657.9 490 66.3
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.8e-186 656.4 524 64.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.3e-186 656.0 490 68.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.0e-186 655.2 490 66.5
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 8.8e-186 654.1 490 69.8
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.5e-185 653.3 512 66.0
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.6e-185 652.5 488 69.1
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.6e-185 652.5 469 70.1
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 3.4e-185 652.1 471 71.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.3e-184 650.2 466 70.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.8e-184 649.0 485 69.3
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 4.9e-184 648.3 497 67.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.1e-183 645.2 488 68.6
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.1e-183 645.2 497 66.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 4.1e-183 645.2 467 70.2
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.2e-182 643.7 472 69.7
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.6e-182 643.3 488 68.0
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.6e-182 643.3 492 67.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.7e-182 642.5 490 67.3
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.7e-182 642.5 477 69.8
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.5e-182 641.7 492 67.1
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.3e-181 640.2 503 65.4
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.3e-181 639.4 482 66.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 2.3e-181 639.4 492 66.9
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.3e-181 639.4 492 66.9
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.9e-181 639.0 502 67.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 1.1e-180 637.1 490 66.3
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.5e-180 636.7 475 70.1
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.5e-180 634.0 492 66.7
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-179 633.3 490 66.7
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.1e-179 632.9 443 71.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 3.6e-179 632.1 476 68.5
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.3e-178 629.4 468 69.9
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-177 627.1 473 68.5
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 2.6e-177 625.9 480 67.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 4.9e-176 621.7 479 67.2
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.1e-175 618.6 494 64.4
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 9.2e-175 617.5 469 67.2
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 9.2e-175 617.5 462 69.0
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.5e-174 615.5 466 68.0
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.9e-174 614.8 495 63.4
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.7e-173 613.2 486 65.6
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 5.0e-173 611.7 459 68.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 5.0e-173 611.7 513 60.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.1e-172 610.5 473 65.5
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.1e-172 610.5 477 66.2
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.9e-172 609.8 459 68.0
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 3.3e-172 609.0 484 65.5
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 7.3e-172 607.8 442 68.3
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 7.3e-172 607.8 456 68.0
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 9.5e-172 607.4 473 66.6
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 2.1e-171 606.3 442 68.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.1e-171 606.3 475 66.1
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 4.7e-171 605.1 473 66.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 6.2e-171 604.7 474 65.0
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 6.2e-171 604.7 474 65.0
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.0e-170 604.0 469 65.0
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.4e-170 603.6 469 65.5
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-170 602.4 425 72.0
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 5.2e-170 601.7 451 67.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 3.4e-169 599.0 479 65.1
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 5.8e-169 598.2 468 63.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 9.8e-169 597.4 457 68.1
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.9e-168 595.9 474 64.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.9e-168 595.9 474 64.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 4.9e-168 595.1 458 65.1
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.7e-166 589.3 442 66.7
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 7.8e-166 587.8 498 61.6
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 8.3e-160 567.8 533 57.4
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.6e-158 563.5 469 62.9
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 5.1e-157 558.5 487 62.6
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.1e-154 549.3 427 65.8
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 6.8e-154 548.1 427 65.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.2e-152 543.1 560 54.1
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.4e-152 541.6 491 60.3
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.7e-149 533.5 473 61.7
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.7e-149 533.5 506 56.3
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 9.6e-148 527.7 460 60.2
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 7.6e-145 518.1 509 55.6
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.1e-143 514.2 473 58.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 4.2e-143 512.3 374 70.3
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.8e-138 496.9 384 67.4
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 5.8e-137 491.9 481 56.1
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.2e-134 484.2 383 64.2
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 6.2e-123 445.3 472 51.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.2e-121 441.0 331 68.0
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.2e-118 431.0 461 49.9
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 4.8e-107 392.5 267 73.4
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.7e-105 385.2 231 82.3
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 3.3e-100 369.8 244 75.4
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 6.3e-91 339.0 201 82.6
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.4e-90 337.8 202 81.7
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.1e-90 336.3 239 68.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.1e-90 336.3 239 68.6
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.8e-88 329.7 268 63.8
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 5.0e-88 329.3 291 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 4.1e-82 309.7 322 50.6
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 8.0e-78 295.4 318 50.0
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.8e-77 294.3 191 74.9
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-76 291.6 328 46.6
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 3.4e-76 290.0 186 77.4
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 4.4e-76 289.7 177 80.2
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.5e-71 273.9 214 66.8
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 6.1e-70 269.2 201 66.2
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.7e-68 262.7 199 66.8
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 3.1e-66 256.9 211 62.1
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.5e-65 253.1 249 54.2
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 7.0e-58 229.2 171 67.8
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.3e-56 224.2 158 68.4
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.2e-52 211.8 163 63.8
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.6e-41 173.3 172 57.0
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.0e-40 170.6 422 28.0
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 4.0e-37 160.2 517 30.9
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.1e-32 143.3 129 60.5
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.3e-31 140.2 226 42.9
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.2e-30 136.3 157 51.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 2.1e-25 121.3 146 46.6
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.6e-23 113.2 102 57.8
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 8.4e-19 99.4 55 85.5
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.7e-17 94.4 268 32.5
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 6.0e-17 93.2 55 76.4
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.8e-14 84.3 63 65.1
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 3.7e-14 84.0 153 37.9
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.5e-12 78.6 77 54.5
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.5e-12 77.0 71 56.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.2e-11 74.7 69 65.2
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.4e-11 72.8 98 43.9


User provided reference genes

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