Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 6.7e-72 273.9 133 100.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 8.5e-51 203.8 131 71.8
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.8e-40 169.5 131 63.4
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.3e-40 169.1 125 62.4
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 3.9e-40 168.3 135 64.4
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.5e-39 166.4 132 65.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 9.7e-39 163.7 132 65.9
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-38 163.3 111 69.4
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.8e-38 162.2 132 64.4
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 4.8e-38 161.4 126 65.1
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.8e-37 159.5 132 62.9
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.8e-37 159.5 124 61.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 5.3e-37 157.9 133 63.2
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.3e-37 157.9 139 59.7
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.3e-37 157.9 139 59.7
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.0e-37 157.5 131 63.4
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.6e-36 156.4 134 59.7
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.6e-36 156.4 125 59.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.6e-36 155.6 128 64.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.7e-36 154.1 125 58.4
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 6.5e-35 151.0 133 61.7
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.1e-34 150.2 135 63.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 5.5e-34 147.9 134 57.5
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.6e-33 145.2 136 61.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 6.1e-33 144.4 140 57.9
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.0e-32 143.7 140 57.1
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.3e-32 142.5 128 59.4
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 3.0e-32 142.1 139 56.1
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 5.2e-32 141.4 132 59.8
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 5.2e-32 141.4 132 53.8
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.2e-32 141.4 132 53.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 8.8e-32 140.6 143 52.4
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 8.8e-32 140.6 133 59.4
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.2e-31 140.2 135 60.0
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 2.6e-31 139.0 143 51.7
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.6e-31 139.0 141 55.3
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.6e-31 139.0 131 55.0
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.6e-31 139.0 132 56.8
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.4e-31 138.7 138 55.8
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.4e-31 138.3 138 55.8
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.4e-31 138.3 143 52.4
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.4e-31 138.3 124 57.3
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.5e-31 137.5 134 55.2
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 9.7e-31 137.1 141 53.9
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 9.7e-31 137.1 143 52.4
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 9.7e-31 137.1 141 53.9
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 138 55.1
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 2.2e-30 136.0 139 56.1
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.2e-30 136.0 131 55.7
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 2.8e-30 135.6 139 55.4
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.7e-30 135.2 143 53.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.7e-30 135.2 134 55.2
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 3.7e-30 135.2 128 57.0
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.7e-30 135.2 139 55.4
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.8e-30 134.8 141 53.2
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.3e-30 134.4 132 51.5
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 6.3e-30 134.4 136 54.4
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 8.3e-30 134.0 138 55.1
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.3e-30 134.0 132 51.5
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.1e-29 133.7 139 54.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.1e-29 133.7 137 55.5
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.4e-29 133.3 143 51.7
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.4e-29 133.3 138 55.1
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.4e-29 133.3 119 58.8
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.4e-29 133.3 118 57.6
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.4e-29 133.3 130 58.5
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.8e-29 132.9 143 51.7
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.8e-29 132.9 120 60.8
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.8e-29 132.9 136 54.4
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.4e-29 132.5 112 62.5
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.4e-29 132.5 131 53.4
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 3.1e-29 132.1 125 56.8
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 7.0e-29 131.0 134 53.7
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 9.1e-29 130.6 128 57.8
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.6e-28 129.8 125 56.8
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.6e-28 129.8 89 69.7
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.6e-28 129.8 155 49.0
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.6e-28 129.8 128 54.7
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.5e-28 128.6 115 60.0
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.9e-28 127.9 141 53.2
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 7.7e-28 127.5 151 47.0
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.3e-27 126.7 111 57.7
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.7e-27 126.3 125 55.2
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.5e-27 124.4 134 52.2
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 8.5e-27 124.0 184 42.4
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.9e-26 122.9 139 50.4
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.5e-26 122.5 121 53.7
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.2e-26 122.1 124 54.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.2e-26 120.9 109 60.6
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 7.2e-26 120.9 129 56.6
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 9.4e-26 120.6 131 50.4
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 1.2e-25 120.2 135 51.1
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 2.1e-25 119.4 141 50.4
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 2.1e-25 119.4 138 49.3
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.7e-25 119.0 126 54.8
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.6e-25 118.6 114 57.0
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.4e-24 116.7 111 59.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 2.3e-24 115.9 124 52.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.0e-24 115.2 129 48.8
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 5.2e-24 114.8 133 53.4
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 8.8e-24 114.0 124 52.4
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.2e-23 113.6 135 51.9
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.5e-23 113.2 126 51.6
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.0e-23 112.8 123 51.2
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.0e-23 112.8 123 51.2
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.0e-23 112.8 122 51.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.0e-23 112.8 57 82.5
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 5.7e-23 111.3 124 53.2
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 9.8e-23 110.5 133 47.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 9.8e-23 110.5 124 51.6
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.7e-22 109.8 159 44.0
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 2.8e-22 109.0 104 55.8
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 4.8e-22 108.2 133 49.6
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.1e-21 107.1 118 50.0
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.1e-21 107.1 110 56.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.1e-21 107.1 132 50.0
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.8e-21 106.3 114 57.0
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.8e-21 106.3 115 59.1
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.8e-21 106.3 115 59.1
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.4e-21 105.9 124 49.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.1e-21 105.5 59 78.0
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.1e-21 105.1 112 57.1
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.2e-20 103.6 97 55.7
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.6e-20 103.2 58 74.1
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 4.5e-20 101.7 116 52.6
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.5e-20 101.7 115 50.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.0e-19 100.5 131 49.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 6.6e-19 97.8 70 61.4
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 3.3e-18 95.5 130 48.5
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.5e-18 94.7 143 42.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.0e-16 90.5 119 46.2
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 3.0e-16 89.0 76 64.5
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.0e-16 88.6 67 59.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 1.5e-15 86.7 49 71.4
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 3.4e-15 85.5 50 70.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.7e-14 83.2 50 70.0
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.2e-14 82.8 132 44.7
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.1e-13 80.5 112 46.4
SalBow1G0501 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.4e-13 80.1 80 51.2
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 1.8e-13 79.7 127 44.1
SalBow1G4992 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.8e-13 79.7 80 50.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.4e-13 79.3 101 48.5
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.6e-12 76.6 49 63.3
SalBow1G0857 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.5e-12 75.5 80 48.8
SalBow1G3820 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.9e-12 74.7 82 47.6
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.3e-11 73.6 104 44.2
SalBow1G6351 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.6e-11 70.9 79 48.1
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.1e-10 70.5 91 56.0
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.1e-10 70.5 40 80.0
SalBow1G6948 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.6e-10 68.2 80 43.8
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.6e-09 65.5 106 47.2
CAN.G536.1 Capsicum annuum HOM05D006894 ORTHO05D000067 1.0e-08 63.9 42 71.4
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.0e-08 63.9 86 50.0
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.0e-08 62.0 99 43.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.2e-07 60.5 37 75.7
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 1.3e-06 57.0 117 35.0


User provided reference genes

Program Settings