Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23326 Avicennia marina HOM05D006522 ORTHO05D008183 4.2e-145 518.1 275 100.0
SGA_v2.0_scaffold2G01317 Striga asiatica HOM05D006522 ORTHO05D008183 7.0e-100 367.9 318 64.2
Cc00_g21690 Coffea canephora HOM05D006522 ORTHO05D008183 1.1e-97 360.5 295 65.1
Nitab4.5_0001027g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 1.5e-97 360.1 225 77.8
CAN.G1550.13 Capsicum annuum HOM05D006522 ORTHO05D008183 2.5e-97 359.4 271 69.0
PGSC0003DMG400023383 Solanum tuberosum HOM05D006522 ORTHO05D008183 4.7e-96 355.1 271 67.2
Nitab4.5_0003396g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 6.1e-96 354.8 271 68.6
Sopen05g033820 Solanum pennellii HOM05D006522 ORTHO05D008183 6.1e-96 354.8 271 66.8
Migut.H02394 Erythranthe guttata HOM05D006522 ORTHO05D008183 1.0e-95 354.0 241 78.8
CSS0003121 Camellia sinensis var. sinensis HOM05D006522 ORTHO05D008183 9.8e-94 347.4 284 64.8
CANSAT01G1323 Cannabis sativa HOM05D006522 ORTHO05D008183 1.3e-93 347.1 226 75.2
CiPaw.04G095200 Carya illinoinensis HOM05D006522 ORTHO05D008183 2.9e-93 345.9 274 65.7
Potri.005G080300 Populus trichocarpa HOM05D006522 ORTHO05D008183 6.4e-93 344.7 225 75.1
Duzib187G0580 Durio zibethinus HOM05D006522 ORTHO05D008183 8.3e-93 344.4 224 76.3
Gohir.A02G132900 Gossypium hirsutum HOM05D006522 ORTHO05D008183 1.1e-92 344.0 234 73.9
Thecc.01G107900 Theobroma cacao HOM05D006522 ORTHO05D008183 7.0e-92 341.3 271 66.1
EL10Ac1g00879 Beta vulgaris HOM05D006522 ORTHO05D008183 1.2e-91 340.5 224 74.1
Gohir.D03G044300 Gossypium hirsutum HOM05D006522 ORTHO05D008183 1.2e-91 340.5 281 65.5
AUR62013645 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.6e-91 340.1 239 69.0
SalBow3G1116 Salvia bowleyana HOM05D006522 ORTHO05D008183 1.6e-91 340.1 242 74.4
MD15G1329600 Malus domestica HOM05D006522 ORTHO05D008183 2.0e-91 339.7 271 66.1
Hma1.2p1_0070F.1_g037610 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 1.7e-90 336.7 274 64.2
THA.LOC104819310 Tarenaya hassleriana HOM05D006522 ORTHO05D008183 3.0e-90 335.9 278 63.3
Manes.13G077900 Manihot esculenta HOM05D006522 ORTHO05D008183 3.9e-90 335.5 255 69.4
Medtr8g091510 Medicago truncatula HOM05D006522 ORTHO05D008183 3.9e-90 335.5 276 63.0
FvH4_1g21690 Fragaria vesca HOM05D006522 ORTHO05D008183 6.6e-90 334.7 268 65.3
HanXRQChr14g0446011 Helianthus annuus HOM05D006522 ORTHO05D008183 6.6e-90 334.7 269 63.9
Ah.05g174330 Amaranthus hybridus HOM05D006522 ORTHO05D008183 1.1e-89 334.0 221 74.7
RcHm_v2.0_Chr2g0115571 Rosa chinensis HOM05D006522 ORTHO05D008183 1.1e-89 334.0 224 73.7
Os03g0195200 Oryza sativa ssp. japonica HOM05D006522 ORTHO05D008183 1.5e-89 333.6 227 69.2
Eucgr.I00376 Eucalyptus grandis HOM05D006522 ORTHO05D008183 1.9e-89 333.2 278 65.1
ECA238G0371 Erigeron canadensis HOM05D006522 ORTHO05D008183 3.3e-89 332.4 271 63.8
Sc23g0003650 Simmondsia chinensis HOM05D006522 ORTHO05D008183 3.3e-89 332.4 240 68.8
Sed0017006 Sechium edule HOM05D006522 ORTHO05D008183 9.5e-89 330.9 269 65.4
TWI53G0226 Tripterygium wilfordii HOM05D006522 ORTHO05D008183 1.2e-88 330.5 269 63.6
Glyma.05G181800 Glycine max HOM05D006522 ORTHO05D008183 1.6e-88 330.1 225 70.7
Glyma.08G139500 Glycine max HOM05D006522 ORTHO05D008183 2.1e-88 329.7 225 70.7
Lj4g0021245 Lotus japonicus HOM05D006522 ORTHO05D008183 2.1e-88 329.7 275 62.2
VMungo0251G3519 Vigna mungo HOM05D006522 ORTHO05D008183 2.1e-88 329.7 274 62.4
Thhalv10014396m.g Eutrema salsugineum HOM05D006522 ORTHO05D008183 3.6e-88 328.9 224 70.1
Carub.0006s0853 Capsella rubella HOM05D006522 ORTHO05D008183 1.1e-87 327.4 225 70.2
HPP92_027257 Vanilla planifolia HOM05D006522 ORTHO05D008183 1.1e-87 327.4 225 72.0
Ciclev10027591m.g Citrus clementina HOM05D006522 ORTHO05D008183 1.8e-87 326.6 288 63.5
Lalb_Chr12g0203641 Lupinus albus HOM05D006522 ORTHO05D008183 1.8e-87 326.6 272 62.9
GSVIVG01022189001 Vitis vinifera HOM05D006522 ORTHO05D008183 3.1e-87 325.9 303 58.4
Actinidia28878 Actinidia chinensis HOM05D001075 ORTHO05D008183 5.2e-87 325.1 268 62.7
AL6G20520 Arabidopsis lyrata HOM05D006522 ORTHO05D008183 8.9e-87 324.3 221 70.1
PSO675G0908 Papaver somniferum HOM05D006522 ORTHO05D008183 8.9e-87 324.3 242 67.8
AUR62004203 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.2e-86 323.9 239 67.8
Dinv16321 Davidia involucrata HOM05D006522 ORTHO05D008183 1.2e-86 323.9 268 63.4
Prupe.6G178600 Prunus persica HOM05D006522 ORTHO05D008183 1.2e-86 323.9 216 75.0
PSO541G5899 Papaver somniferum HOM05D006522 ORTHO05D008183 2.0e-86 323.2 224 71.9
BcaC04g19347 Brassica carinata HOM05D006522 ORTHO05D008183 2.6e-86 322.8 237 68.4
BolC9t59510H Brassica oleracea HOM05D006522 ORTHO05D008183 2.6e-86 322.8 237 68.4
C09p67500 Brassica napus HOM05D006522 ORTHO05D008183 3.4e-86 322.4 237 68.4
BraA10t44795Z Brassica rapa HOM05D006522 ORTHO05D008183 3.4e-86 322.4 237 66.7
Sp6g33330 Schrenkiella parvula HOM05D006522 ORTHO05D008183 3.4e-86 322.4 223 69.1
Zm00001eb401110 Zea mays HOM05D006522 ORTHO05D008183 4.4e-86 322.0 217 71.0
arahy.Tifrunner.gnm1.ann1.8IYW0J Arachis hypogaea HOM05D006522 ORTHO05D008183 5.8e-86 321.6 286 60.8
Psat7g053400 Pisum sativum HOM05D006522 ORTHO05D008183 7.5e-86 321.2 221 69.7
QL06p050567 Quercus lobata HOM05D006522 ORTHO05D008183 1.3e-85 320.5 276 63.0
Phvul.002G262800 Phaseolus vulgaris HOM05D006522 ORTHO05D008183 3.7e-85 318.9 271 59.0
Aa31LG3G17070 Aethionema arabicum HOM05D006522 ORTHO05D008183 1.4e-84 317.0 222 70.3
Ca_17709_v3 Cicer arietinum L. HOM05D006522 ORTHO05D008183 5.4e-84 315.1 226 68.6
Rhsim10G0156200 Rhododendron simsii HOM05D006522 ORTHO05D008183 2.7e-83 312.8 354 52.8
TAR376G0333 Trochodendron aralioides HOM05D006522 ORTHO05D008183 2.7e-83 312.8 279 60.9
vmacro12933 Vaccinium macrocarpon HOM05D006522 ORTHO05D008183 4.6e-83 312.0 266 63.5
ATR0564G484 Amborella trichopoda HOM05D006522 ORTHO05D008183 1.3e-82 310.5 253 64.0
MELO3C017578.2 Cucumis melo HOM05D006522 ORTHO05D008183 2.3e-82 309.7 248 67.3
FAN26G1180 Fragaria x ananassa HOM05D006522 ORTHO05D008183 1.9e-81 306.6 331 54.4
BcaB08g37142 Brassica carinata HOM05D006522 ORTHO05D008183 2.5e-81 306.2 209 71.8
Oeu028389.1 Olea europaea HOM05D006522 ORTHO05D008183 7.3e-81 304.7 186 79.6
CARHR203220 Cardamine hirsuta HOM05D006522 ORTHO05D008183 1.6e-80 303.5 211 70.6
Gorai.003G045400 Gossypium raimondii HOM05D006522 ORTHO05D008183 2.1e-80 303.1 281 60.1
unitig_736.g22572 Utricularia gibba HOM05D006522 ORTHO05D008183 6.8e-79 298.1 306 53.6
TPR.G2232 Trifolium pratense HOM05D006522 ORTHO05D008183 2.0e-78 296.6 267 56.6
PGR004G1063 Punica granatum HOM05D006522 ORTHO05D008183 1.9e-76 290.0 271 58.7
COL.COLO4_11046 Corchorus olitorius HOM05D006522 ORTHO05D008183 1.2e-75 287.3 225 67.1
Sabra05G0065900 Salix brachista HOM05D006522 ORTHO05D008183 2.7e-75 286.2 275 57.5
Aqoxy6G00537 Aquilegia oxysepala HOM05D006522 ORTHO05D008183 3.9e-74 282.3 190 73.7
AUR62013648 Chenopodium quinoa HOM05D006522 ORTHO05D008183 3.9e-74 282.3 239 62.3
Nn5g28991 Nelumbo nucifera HOM05D006522 ORTHO05D008183 3.9e-74 282.3 272 57.4
Atru.chr4.281 Acer truncatum HOM05D006522 ORTHO05D008183 1.9e-73 280.0 270 57.4
Hma1.2p1_0070F.1_g037620 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 2.5e-73 279.6 274 56.9
Mapoly0168s0016 Marchantia polymorpha HOM05D006522 ORTHO05D008183 8.9e-71 271.2 217 61.8
CsaV3_UNG186480 Cucumis sativus L. HOM05D006522 ORTHO05D008183 7.6e-70 268.1 203 68.0
A10p27440 Brassica napus HOM05D006522 ORTHO05D008183 1.3e-69 267.3 159 79.9
Pp3c17_17150 Physcomitrium patens HOM05D006522 ORTHO05D008183 2.9e-69 266.2 210 61.4
AT5G10070 Arabidopsis thaliana HOM05D006522 ORTHO05D008183 3.8e-69 265.8 143 84.6
Lj2A556G28 Lonicera japonica HOM05D006522 ORTHO05D008183 6.4e-69 265.0 224 62.9
arahy.Tifrunner.gnm1.ann1.2EL0K0 Arachis hypogaea HOM05D006522 ORTHO05D008183 2.4e-68 263.1 186 70.4
FAN19G2878 Fragaria x ananassa HOM05D006522 ORTHO05D008183 4.2e-68 262.3 316 50.6
Cfa002723 Carpinus fangiana HOM05D006522 ORTHO05D008183 1.2e-67 260.8 192 68.2
ECA238G2930 Erigeron canadensis HOM05D006522 ORTHO05D008183 4.6e-67 258.8 190 67.9
SMO139G0021 Selaginella moellendorffii HOM05D006522 ORTHO05D008183 1.5e-65 253.8 215 57.2
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 4.0e-63 245.7 244 49.6
Lsat_1_v5_gn_2_67761 Lactuca sativa HOM05D006522 ORTHO05D008183 1.5e-62 243.8 260 51.9
Psat7g089320 Pisum sativum HOM05D006522 ORTHO05D008183 2.4e-60 236.5 195 62.6
MCO11G860 Micromonas commoda HOM05D006522 ORTHO05D008183 9.0e-55 218.0 217 47.9
Cre17.g698950 Chlamydomonas reinhardtii HOM05D006522 ORTHO05D008183 1.2e-54 217.6 166 59.6
BcaB08g37140 Brassica carinata HOM05D006522 ORTHO05D008183 9.9e-54 214.5 127 76.4
Haze_26963 Corylus avellana HOM05D006522 ORTHO05D008183 9.9e-54 214.5 166 56.0
PRCOL_00002914 Prasinoderma coloniale HOM05D006522 ORTHO05D008183 4.6e-51 205.7 166 56.6
ClCG09G014260 Citrullus lanatus HOM05D006522 ORTHO05D008183 1.3e-48 197.6 287 46.3
MD01G1023100 Malus domestica HOM05D006522 ORTHO05D008183 2.3e-42 176.8 137 68.6
CDE10G0337 Ceratophyllum demersum HOM05D006522 ORTHO05D008183 5.1e-42 175.6 188 57.4
Cfa022135 Carpinus fangiana HOM05D006522 ORTHO05D008183 1.0e-37 161.4 217 38.7
Haze_24999 Corylus avellana HOM05D006522 ORTHO05D008183 1.9e-33 147.1 194 46.9
AUR62004200 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.7e-29 134.0 221 38.9
Eucgr.L02916 Eucalyptus grandis HOM05D006522 ORTHO05D008183 5.1e-26 122.5 108 63.9
SEGI_11019 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 3.4e-22 109.8 55 89.1
SHI11627 Sapria himalayana HOM05D006522 ORTHO05D008183 1.8e-18 97.4 97 55.7
SEGI_36547 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 6.7e-18 95.5 90 54.4
SHI11626 Sapria himalayana HOM05D006522 ORTHO05D008183 2.0e-17 94.0 59 69.5
MD01G1023200 Malus domestica HOM05D006522 ORTHO05D008183 3.3e-17 93.2 63 69.8
Potri.007G087000 Populus trichocarpa HOM05D006522 ORTHO05D008183 1.2e-14 84.7 82 61.0
COL.COLO4_11047 Corchorus olitorius HOM05D006522 ORTHO05D008183 3.5e-14 83.2 103 51.5
AagrBONN_evm.TU.Sc2ySwM_368.3361 Anthoceros agrestis HOM05D006522 ORTHO05D008183 2.9e-13 80.1 91 45.1
Aqoxy6G00538 Aquilegia oxysepala HOM05D006522 ORTHO05D008183 9.7e-09 65.1 83 47.0
CDE10G0344 Ceratophyllum demersum HOM05D006522 ORTHO05D008183 3.7e-08 63.2 77 41.6


User provided reference genes

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