Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 0.0e+00 1149.8 551 100.0
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 2.8e-225 785.4 539 72.0
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.6e-223 779.6 465 78.1
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.9e-223 777.7 545 70.6
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 4.7e-220 768.1 546 68.9
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 8.8e-219 763.8 464 77.2
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 2.4e-216 755.7 461 76.4
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 7.0e-216 754.2 462 77.7
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 1.2e-215 753.4 461 75.9
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 2.0e-215 752.7 522 69.7
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.2e-214 749.2 461 76.1
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 3.8e-214 748.4 477 74.6
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 3.8e-214 748.4 461 75.9
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 5.0e-214 748.0 457 76.8
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 6.5e-214 747.7 476 73.9
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 9.4e-213 743.8 460 74.8
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 1.6e-212 743.0 463 74.1
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 2.1e-212 742.7 501 70.7
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 4.7e-212 741.5 459 74.5
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 3.0e-211 738.8 462 74.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 4.0e-211 738.4 487 70.6
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 4.0e-211 738.4 463 73.7
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 8.8e-211 737.3 476 72.9
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 8.8e-211 737.3 463 73.9
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 8.3e-209 730.7 473 73.4
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.1e-208 730.3 475 72.6
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.4e-208 729.2 487 71.7
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 9.1e-208 727.2 474 73.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.5e-207 725.3 462 73.8
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 4.5e-207 724.9 473 72.1
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 5.9e-207 724.5 473 72.5
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 7.7e-207 724.2 484 70.9
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 7.7e-207 724.2 469 72.5
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.2e-206 722.6 458 73.1
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 2.2e-206 722.6 431 78.7
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 8.5e-206 720.7 462 73.2
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 2.5e-205 719.2 458 73.6
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 7.2e-205 717.6 474 72.8
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.2e-204 716.8 464 71.8
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 1.2e-204 716.8 480 70.8
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.6e-204 716.5 477 71.5
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.6e-204 715.3 490 69.8
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 4.7e-204 714.9 491 67.6
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 4.7e-204 714.9 513 66.7
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 6.1e-204 714.5 477 71.1
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.0e-203 713.8 463 73.2
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.0e-203 712.2 491 67.4
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 8.8e-203 710.7 499 68.9
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 2.2e-201 706.1 468 69.9
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 2.2e-201 706.1 468 69.9
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 8.3e-201 704.1 470 70.0
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 2.4e-200 702.6 453 72.8
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 4.1e-200 701.8 458 71.2
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 7.0e-200 701.0 463 70.0
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 9.2e-200 700.7 469 69.1
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.2e-199 700.3 469 69.1
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.6e-199 699.9 467 70.4
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 1.6e-199 699.9 459 70.4
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 7.7e-199 697.6 460 70.2
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 1.0e-198 697.2 421 78.4
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.6e-197 691.4 442 73.8
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 5.6e-197 691.4 471 68.2
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.2e-196 690.3 463 68.9
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.6e-196 689.9 506 65.4
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 4.7e-196 688.3 480 67.5
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 1.8e-195 686.4 481 70.7
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 4.0e-195 685.3 500 65.8
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.5e-194 683.3 459 69.5
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.6e-194 682.6 437 75.1
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 3.4e-194 682.2 485 67.8
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 5.7e-194 681.4 468 70.1
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 7.0e-192 674.5 461 69.2
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 1.6e-191 673.3 483 66.7
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 2.0e-191 672.9 496 64.9
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.7e-190 669.8 500 65.0
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 2.3e-190 669.5 485 67.0
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 6.6e-190 667.9 500 65.0
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 1.1e-189 667.2 454 68.9
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 2.5e-189 666.0 482 66.2
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 2.5e-189 666.0 465 67.3
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 9.5e-189 664.1 461 67.0
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.6e-188 663.3 458 67.5
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.0e-187 660.6 489 63.8
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.4e-187 660.2 419 74.0
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 5.2e-187 658.3 447 69.4
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.0e-186 656.4 419 73.7
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.9e-185 652.5 458 66.8
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.6e-180 635.6 433 67.0
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 4.0e-179 632.1 416 72.8
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.2e-178 630.6 456 63.4
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 9.8e-178 627.5 423 70.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.9e-177 625.9 510 56.9
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 7.1e-176 621.3 419 71.4
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 3.6e-172 609.0 381 76.4
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 4.4e-162 575.5 348 77.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.3e-149 532.7 460 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 9.3e-144 514.6 450 54.4
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 1.3e-142 510.8 464 53.2
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 5.1e-142 508.8 493 54.6
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 2.8e-132 476.5 346 65.3
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.3e-129 467.6 508 45.7
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 6.5e-129 465.3 419 56.6
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.3e-116 424.5 318 66.0
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 1.7e-116 424.1 415 54.9
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 4.1e-107 392.9 478 43.9
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 5.9e-98 362.5 300 60.0
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.9e-96 357.5 197 80.7
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 1.2e-95 354.8 235 74.5
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.1e-95 354.0 448 41.1
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 3.5e-90 336.7 458 40.6
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 1.0e-81 308.5 184 74.5
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 9.2e-75 285.4 455 37.1
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 6.0e-74 282.7 207 69.6
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 3.2e-67 260.4 150 77.3
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 1.2e-66 258.5 226 60.2
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 6.0e-66 256.1 150 76.0
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 1.1e-64 251.9 230 56.5
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.2e-43 180.6 418 31.3
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 5.3e-38 163.3 144 59.0
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 5.5e-19 100.1 76 68.4
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 2.1e-18 98.2 66 65.2
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.1e-14 85.9 67 55.2
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.3e-14 83.6 46 76.1
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 9.0e-14 82.8 271 24.4
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 2.0e-13 81.6 296 24.0
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 3.4e-13 80.9 269 23.8
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 5.9e-13 80.1 269 25.7
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 5.9e-13 80.1 298 24.8
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 7.7e-13 79.7 271 24.4
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 7.7e-13 79.7 270 24.4
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.0e-12 79.3 271 24.0
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.7e-12 78.6 268 23.1
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.2e-12 78.2 86 44.2
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.2e-12 78.2 269 24.2
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.8e-12 77.4 271 24.0
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 5.0e-12 77.0 308 24.0
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 5.0e-12 77.0 279 24.7
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 5.0e-12 77.0 267 24.0
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 5.0e-12 77.0 268 24.3
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 8.5e-12 76.3 281 22.8
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 8.5e-12 76.3 309 23.3
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.1e-11 75.9 239 25.1
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.1e-11 75.9 271 22.9
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 9.4e-11 72.8 270 22.2
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.2e-10 72.4 277 22.4
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 2.1e-10 71.6 53 69.8
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 2.1e-10 71.6 269 22.7
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.4e-06 58.9 116 35.3


User provided reference genes

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